ggKbase home page

PLM1_60_b1_redo_sep16_scaffold_132

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_132_1
Streptomyces sp. HPH0547, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..3685
DNA (3684bp) protein (1228aa)
Uncharacterized protein Tax=Streptomyces sp. HPH0547 RepID=S3B258_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EPD93410.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. HPH0547.;"
cell division FtsK/SpoIIIE
PLM1_60_b1_redo_sep16_scaffold_132_2
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3667..5295)
DNA (1629bp) protein (543aa)
Delta-1-pyrroline-5-carboxylate dehydrogenase Tax=Micromonospora sp. ATCC 39149 RepID=C4RRB6_9ACTO
Delta-1-pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:EEP73661.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
delta-1-pyrroline-5-carboxylate dehydrogenase
PLM1_60_b1_redo_sep16_scaffold_132_3
unknown

Not on your lists

5458..6390
DNA (933bp) protein (311aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_132_4
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6387..6878)
DNA (492bp) protein (164aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2P7D1_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:EXG80008.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_132_5
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6892..7902)
DNA (1011bp) protein (337aa)
patatin Tax=Frankia sp. Iso899 RepID=UPI0003B72E3D
Putative esterase of the alpha-beta hydrolase superfamily {ECO:0000313|EMBL:EXG80007.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
patatin
PLM1_60_b1_redo_sep16_scaffold_132_6
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7899..9305)
DNA (1407bp) protein (469aa)
Diacylglycerol O-acyltransferase {ECO:0000256|RuleBase:RU361241}; EC=2.3.1.20 {ECO:0000256|RuleBase:RU361241};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Acyltransferase, WS/DGAT/MGAT Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CRU2_PSEUX
acyltransferase
PLM1_60_b1_redo_sep16_scaffold_132_7
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9390..10052)
DNA (663bp) protein (221aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PMK3_KRIFD
HAD-superfamily hydrolase
HAD-superfamily hydrolase, subfamily IA, variant 3 {ECO:0000313|EMBL:ADB30747.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
PLM1_60_b1_redo_sep16_scaffold_132_8
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10140..11423)
DNA (1284bp) protein (428aa)
ATPase involved in chromosome partitioning Tax=Modestobacter marinus (strain BC501) RepID=I4F342_MODMB
Chromosome partitioning protein {ECO:0000313|EMBL:KGH44773.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
chromosome partitioning ATPase
PLM1_60_b1_redo_sep16_scaffold_132_9
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11420..12178)
DNA (759bp) protein (253aa)
Conserved SAF domain-containing protein Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RKV3_BLASD
hypothetical protein
Conserved SAF domain-containing protein {ECO:0000313|EMBL:CCG04920.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
PLM1_60_b1_redo_sep16_scaffold_132_10
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12413..12670
DNA (258bp) protein (86aa)
DNA binding domain protein, excisionase family Tax=Intrasporangium calvum (strain ATCC 23552 / DSM 43043 / JCM 3097 / NBRC 12989 / 7 KIP) RepID=E6S769_INTC7
DNA-binding protein, excisionase family {ECO:0000313|EMBL:EXG80005.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
excisionase family DNA binding domain-containing protein
PLM1_60_b1_redo_sep16_scaffold_132_11
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12676..13284)
DNA (609bp) protein (203aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI0003607B8A
Uncharacterized protein {ECO:0000313|EMBL:EXG80004.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_132_12
Knoellia subterranea, Knoellia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13397..14188
DNA (792bp) protein (264aa)
hypothetical protein Tax=Terracoccus sp. 273MFTsu3.1 RepID=UPI000360C293
Uncharacterized protein {ECO:0000313|EMBL:KGN36992.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia subterranea KCTC 19937.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_132_13
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14204..14809
DNA (606bp) protein (202aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00037A63CA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG04925.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
PLM1_60_b1_redo_sep16_scaffold_132_14
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14878..17694)
DNA (2817bp) protein (939aa)
preprotein translocase subunit SecA Tax=Longispora albida RepID=UPI00036C863F
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
secA; putative preprotein translocase SecA subunit
PLM1_60_b1_redo_sep16_scaffold_132_15
Frankia sp. CcI3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17869..18414
DNA (546bp) protein (182aa)
hypothetical protein Tax=Streptomyces vitaminophilus RepID=UPI000362ADEF
N-acetyltransferase
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ABD10150.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain CcI3).;"
PLM1_60_b1_redo_sep16_scaffold_132_16
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18411..19007
DNA (597bp) protein (199aa)
GCN5-related N-acetyltransferase Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3PYI5_STANL
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADD41552.1}; species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
PLM1_60_b1_redo_sep16_scaffold_132_17
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19218..19826)
DNA (609bp) protein (203aa)
Sigma 54 modulation protein / SSU ribosomal protein S30P Tax=Micromonospora lupini str. Lupac 08 RepID=I0KX74_9ACTO
Sigma 54 modulation protein / SSU ribosomal protein S30P {ECO:0000313|EMBL:CCH16171.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
sigma 54 modulation protein/ribosomal protein S30EA
PLM1_60_b1_redo_sep16_scaffold_132_18
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20043..20819)
DNA (777bp) protein (259aa)
Phosphoribosyltransferase Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y6C5_THEBD
phosphoribosyltransferase
Phosphoribosyltransferase {ECO:0000313|EMBL:ADG87497.1}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
PLM1_60_b1_redo_sep16_scaffold_132_19
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20931..22697)
DNA (1767bp) protein (589aa)
Uncharacterized protein Tax=Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) RepID=D3PYI0_STANL
Sporulation and spore germination family protein,'beta-propeller protein, lipoprotein LpqB like {ECO:0000313|EMBL:EXG79997.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_132_20
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22681..24414)
DNA (1734bp) protein (578aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
mtrB; two-component system, OmpR family, sensor histidine kinase MtrB (EC:2.7.13.3)
Two-component system, OmpR family, sensor histidine kinase MtrB Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8SLB1_ACTS5
PLM1_60_b1_redo_sep16_scaffold_132_21
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24423..25112)
DNA (690bp) protein (230aa)
XRE family transcriptional regulator Tax=Catelliglobosispora koreensis RepID=UPI0003612878
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EXG79995.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
response regulator receiver
PLM1_60_b1_redo_sep16_scaffold_132_22
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25324..26283
DNA (960bp) protein (320aa)
Putative integral membrane protein Tax=Nocardioidaceae bacterium Broad-1 RepID=E9UXX0_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KJK33064.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_132_23
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26284..26994
DNA (711bp) protein (237aa)
hypothetical protein Tax=Streptomyces sp. BoleA5 RepID=UPI0003779022
Uncharacterized protein {ECO:0000313|EMBL:EXG79993.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
membrane protein
PLM1_60_b1_redo_sep16_scaffold_132_24
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26991..28205
DNA (1215bp) protein (405aa)
hypothetical protein Tax=Amycolatopsis alba RepID=UPI00037750E1
Uncharacterized protein {ECO:0000313|EMBL:EXG79992.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_132_25
Cellulomonas carbonis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28217..29413
DNA (1197bp) protein (399aa)
hypothetical protein Tax=Longispora albida RepID=UPI0003658B0D
ATPase AAA {ECO:0000313|EMBL:KGM09417.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas carbonis T26.;"
ATPase
PLM1_60_b1_redo_sep16_scaffold_132_26
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29418..30728
DNA (1311bp) protein (437aa)
hypothetical protein Tax=Longispora albida RepID=UPI00036C9B1A
Uncharacterized protein {ECO:0000313|EMBL:EXG79990.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_132_27
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30826..31380
DNA (555bp) protein (185aa)
GCN5-related N-acetyltransferase Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PSL9_KRIFD
GCN5-related N-acetyltransferase
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADB33157.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
PLM1_60_b1_redo_sep16_scaffold_132_28
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31377..32372)
DNA (996bp) protein (332aa)
hypothetical protein Tax=Longispora albida RepID=UPI00037D5848
Putative membrane protein {ECO:0000313|EMBL:EXG79988.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_132_29
Catenulispora acidiphila, Catenulispora, Catenulisporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32618..33982)
DNA (1365bp) protein (455aa)
Cystathionine beta-synthase Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7PZ24_CATAD
cystathionine beta-synthase
Cystathionine beta-synthase {ECO:0000313|EMBL:ACU69580.1}; species="Bacteria; Actinobacteria; Catenulisporales; Catenulisporaceae; Catenulispora.;" source="Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC; 102108 / JCM 14897).;"
PLM1_60_b1_redo_sep16_scaffold_132_30
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34047..36494)
DNA (2448bp) protein (816aa)
Regulatory protein Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W0P6_9ACTO
NB-ARC domain protein {ECO:0000313|EMBL:EXG79980.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
regulatory protein
Displaying items 1-30 of 47 in total

View Taxonomy