ggKbase home page

PLM1_60_b1_redo_sep16_scaffold_227

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_227_1
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

357..950
DNA (594bp) protein (198aa)
Uncharacterized protein Tax=Sorangium cellulosum (strain So ce56) RepID=A9EQF7_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN94134.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
PLM1_60_b1_redo_sep16_scaffold_227_2
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1017..2087)
DNA (1071bp) protein (357aa)
Polyprenyl synthetase Tax=Micromonospora sp. ATCC 39149 RepID=C4RLK7_9ACTO
Polyprenyl synthetase {ECO:0000313|EMBL:EEP70916.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
polyprenyl synthetase
PLM1_60_b1_redo_sep16_scaffold_227_3
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2231..3151
DNA (921bp) protein (307aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
hypothetical protein Tax=Catelliglobosispora koreensis RepID=UPI0003653A92
putative 5,10-methylenetetrahydrofolate reductase
PLM1_60_b1_redo_sep16_scaffold_227_4
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3144..3770
DNA (627bp) protein (209aa)
hypothetical protein Tax=Longispora albida RepID=UPI00037B66D9
Uncharacterized protein {ECO:0000313|EMBL:KHD75403.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_227_5
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3775..4440
DNA (666bp) protein (222aa)
CDP-diacylglycerol-inositol 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol-inositol 3-phosphatidyltransferase Tax=Frankia alni (strain ACN14a) RepID=Q0RNS2_FRAAA
Micromonospora carbonacea strain JXNU-1 contig3, whole genome shotgun sequence {ECO:0000313|EMBL:KIR60845.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
PLM1_60_b1_redo_sep16_scaffold_227_6
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4594..6108)
DNA (1515bp) protein (505aa)
Phytoene desaturase Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SAD8_GEOOG
Phytoene desaturase {ECO:0000313|EMBL:ADB73867.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
phytoene desaturase
PLM1_60_b1_redo_sep16_scaffold_227_7
Amycolatopsis rifamycinica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6105..7205)
DNA (1101bp) protein (367aa)
Glycosyl transferase Tax=Micromonospora lupini str. Lupac 08 RepID=I0L8Y2_9ACTO
Glycosyl transferase {ECO:0000313|EMBL:KDN17239.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis rifamycinica.;"
glycosyl transferase family protein
PLM1_60_b1_redo_sep16_scaffold_227_8
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7202..7957)
DNA (756bp) protein (252aa)
hypothetical protein Tax=Micromonospora sp. CNB394 RepID=UPI00036659B7
Micromonospora carbonacea strain JXNU-1 contig3, whole genome shotgun sequence {ECO:0000313|EMBL:KIR62078.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_227_9
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7950..8489)
DNA (540bp) protein (180aa)
hypothetical protein Tax=Longispora albida RepID=UPI0003676CFF
Acetyltransferase {ECO:0000313|EMBL:KHD77702.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
GCN5-like N-acetyltransferase
PLM1_60_b1_redo_sep16_scaffold_227_10
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8486..9205)
DNA (720bp) protein (240aa)
putative spheroidene monooxygenase (EC:1.14.-.-)
Putative spheroidene monooxygenase {ECO:0000313|EMBL:CCG01870.1}; EC=1.14.-.- {ECO:0000313|EMBL:CCG01870.1};; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
Putative spheroidene monooxygenase Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RTL2_BLASD
PLM1_60_b1_redo_sep16_scaffold_227_11
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9233..9700)
DNA (468bp) protein (156aa)
YbaK/prolyl-tRNA synthetase associated region Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CUX3_PSEUX
prolyl-tRNA synthetase
YbaK/prolyl-tRNA synthetase associated region {ECO:0000313|EMBL:AEA27442.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM1_60_b1_redo_sep16_scaffold_227_12
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9785..11092
DNA (1308bp) protein (436aa)
Uncharacterized protein Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W2M1_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGZ43379.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM1_60_b1_redo_sep16_scaffold_227_13
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

11306..12274
DNA (969bp) protein (323aa)
Aldo/keto reductase Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FEY7_CONWI
aldo/keto reductase
Aldo/keto reductase {ECO:0000313|EMBL:ADB51704.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM1_60_b1_redo_sep16_scaffold_227_14
Streptomyces lydicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12329..13018)
DNA (690bp) protein (230aa)
Phosphoadenylyl-sulfate reductase (thioredoxin) {ECO:0000256|SAAS:SAAS00089161}; EC=1.8.4.8 {ECO:0000256|SAAS:SAAS00089161};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces lydicus A02.;"
Phosphoadenosine phosphosulfate reductase Tax=Streptomyces rimosus subsp. rimosus ATCC 10970 RepID=L8EMV3_STRRM
phosphoadenosine phosphosulfate reductase
PLM1_60_b1_redo_sep16_scaffold_227_15
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13015..13182)
DNA (168bp) protein (56aa)
Putative uncharacterized protein Tax=Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS 134) RepID=D5UEH5_CELFN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG74635.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
PLM1_60_b1_redo_sep16_scaffold_227_16
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13205..14902)
DNA (1698bp) protein (566aa)
sir; sulfite reductase (EC:1.8.7.1)
Sulfite reductase [ferredoxin] Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RUB5_BLASD
Sulfite reductase {ECO:0000313|EMBL:KGH45417.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
PLM1_60_b1_redo_sep16_scaffold_227_17
Streptomyces viridochromogenes, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15435..16022
DNA (588bp) protein (196aa)
Adenylyl-sulfate kinase {ECO:0000256|HAMAP-Rule:MF_00065, ECO:0000256|RuleBase:RU004347}; EC=2.7.1.25 {ECO:0000256|HAMAP-Rule:MF_00065, ECO:0000256|RuleBase:RU004347};; APS kinase {ECO:0000256|HAMAP-Rule:MF_00065}; ATP adenosine-5'-phosphosulfate 3'-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00065}; Adenosine-5'-phosphosulfate kinase {ECO:0000256|HAMAP-Rule:MF_00065}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces viridochromogenes Tue57.;"
Adenylyl-sulfate kinase Tax=Streptomyces viridochromogenes Tue57 RepID=L8PM16_STRVR
adenylylsulfate kinase
PLM1_60_b1_redo_sep16_scaffold_227_18
Cellulomonas flavigena, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16019..16936
DNA (918bp) protein (306aa)
Sulfate adenylyltransferase subunit 2 {ECO:0000256|HAMAP-Rule:MF_00064}; EC=2.7.7.4 {ECO:0000256|HAMAP-Rule:MF_00064};; ATP-sulfurylase small subunit {ECO:0000256|HAMAP-Rule:MF_00064}; Sulfate adenylate transferase {ECO:0000256|HAMAP-Rule:MF_00064}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas flavigena (strain ATCC 482 / DSM 20109 / NCIB 8073 / NRS; 134).;"
sulfate adenylyltransferase subunit 2 Tax=Frankia sp. Iso899 RepID=UPI0003B4B022
sulfate adenylyltransferase, small subunit
PLM1_60_b1_redo_sep16_scaffold_227_19
Streptomyces mobaraensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17089..18336
DNA (1248bp) protein (416aa)
Sulfate adenylyltransferase subunit 1 {ECO:0000256|SAAS:SAAS00056000}; EC=2.7.7.4 {ECO:0000256|SAAS:SAAS00055979};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces mobaraensis NBRC 13819 = DSM 40847.;"
Sulfate adenylyltransferase subunit 1 (EC:2.7.7.4)
sulfate adenylyltransferase Tax=Streptomyces vitaminophilus RepID=UPI00037AA9C4
PLM1_60_b1_redo_sep16_scaffold_227_20
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18333..19202
DNA (870bp) protein (290aa)
Cobalamin (Vitamin B12) biosynthesis CbiX protein Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A9W7_THECD
cobalamin (vitamin B12) biosynthesis CbiX protein
Cobalamin (Vitamin B12) biosynthesis CbiX protein {ECO:0000313|EMBL:ACY96903.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM1_60_b1_redo_sep16_scaffold_227_21
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19231..20142)
DNA (912bp) protein (304aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI000371477C
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AGB23682.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis JS623.;"
PLM1_60_b1_redo_sep16_scaffold_227_22
Streptomyces aurantiacus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20236..20805)
DNA (570bp) protein (190aa)
hypothetical protein Tax=Amycolatopsis nigrescens RepID=UPI000378B019
Uncharacterized protein {ECO:0000313|EMBL:EPH45365.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces aurantiacus JA 4570.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_227_23
unknown

Not on your lists

21279..21578
DNA (300bp) protein (100aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_227_24
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21578..22069
DNA (492bp) protein (164aa)
Uncharacterized protein Tax=Micromonospora sp. (strain L5) RepID=E8S5T2_MICSL
Uncharacterized protein {ECO:0000313|EMBL:EWM68499.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_227_25
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22078..22818
DNA (741bp) protein (247aa)
Uncharacterized protein Tax=Saccharopolyspora erythraea RepID=A4FP53_SACEN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAM05828.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea (strain NRRL 23338).;"
PLM1_60_b1_redo_sep16_scaffold_227_26
Salinispora tropica, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22821..24503
DNA (1683bp) protein (561aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI000367B5E9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABP55674.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440).;"
PLM1_60_b1_redo_sep16_scaffold_227_27
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24503..27829
DNA (3327bp) protein (1109aa)
DNA polymerase III subunit alpha (EC:2.7.7.7)
Error-prone DNA polymerase {ECO:0000256|HAMAP-Rule:MF_01902}; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01902};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
Error-prone DNA polymerase Tax=Micromonospora sp. (strain L5) RepID=E8S5T5_MICSL
PLM1_60_b1_redo_sep16_scaffold_227_28
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27943..28689
DNA (747bp) protein (249aa)
hypothetical protein Tax=Longispora albida RepID=UPI00037C3FA1
putative methyltransferase
Putative methyltransferase {ECO:0000313|EMBL:BAL86724.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64; / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431).;"
PLM1_60_b1_redo_sep16_scaffold_227_29
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28792..29991
DNA (1200bp) protein (400aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2NYU5_9ACTO
type I phosphodiesterase/nucleotide pyrophosphatase
Type I phosphodiesterase/nucleotide pyrophosphatase {ECO:0000313|EMBL:ACY97206.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM1_60_b1_redo_sep16_scaffold_227_30
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29981..31237
DNA (1257bp) protein (419aa)
DNA-directed DNA polymerase (EC:2.7.7.7)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
DNA polymerase IV Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A7W0_THECD
Displaying items 1-30 of 40 in total

View Taxonomy