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PLM1_60_b1_redo_sep16_scaffold_340

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_340_1
RBG_19FT_COMBO_Chloroflexi_55_16_curated, Chloroflexi, Bacteria

Not on your lists

comp(3..953)
DNA (951bp) protein (317aa)
aldehyde ferredoxin oxidoreductase (EC:1.2.7.5)
hypothetical protein Tax=actinobacterium SCGC AAA027-M14 RepID=UPI00035D1108
Tax=RBG_19FT_COMBO_Chloroflexi_55_16_curated
PLM1_60_b1_redo_sep16_scaffold_340_2
Streptomyces sviceus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(950..1795)
DNA (846bp) protein (282aa)
amidohydrolase Tax=Streptomyces sp. R1-NS-10 RepID=UPI00037F8E78
Amidohydrolase {ECO:0000313|EMBL:EDY58022.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sviceus ATCC 29083.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_340_3
Streptomyces scabiei, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1792..2751)
DNA (960bp) protein (320aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI0003727A53
Aldo/keto reductase {ECO:0000313|EMBL:KFG01213.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces scabiei.;"
oxidoreductase
PLM1_60_b1_redo_sep16_scaffold_340_4
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2748..4262)
DNA (1515bp) protein (505aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI00037D3A4E
Simple sugar transporter ATP-binding protein {ECO:0000313|EMBL:EWM16559.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
ABC transporter permease
PLM1_60_b1_redo_sep16_scaffold_340_5
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4259..5278)
DNA (1020bp) protein (340aa)
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI00036F0484
Ribose ABC transporter permease component {ECO:0000313|EMBL:EWM16560.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
ABC transporter permease
PLM1_60_b1_redo_sep16_scaffold_340_6
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5397..6470)
DNA (1074bp) protein (358aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI000365F582
Sugar ABC transporter permease component {ECO:0000313|EMBL:EWM16561.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
inner-membrane translocator
PLM1_60_b1_redo_sep16_scaffold_340_7
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6547..7635)
DNA (1089bp) protein (363aa)
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI0003628AAE
Mandelate racemase {ECO:0000313|EMBL:ETK33126.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
putative mandelate racemase
PLM1_60_b1_redo_sep16_scaffold_340_8
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7645..8697)
DNA (1053bp) protein (351aa)
hypothetical protein Tax=Kribbella catacumbae RepID=UPI0003638ED4
Sugar ABC transporter periplasmic sugar-binding protein {ECO:0000313|EMBL:EWM16562.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
sugar ABC transporter, periplasmic sugar-binding protein
PLM1_60_b1_redo_sep16_scaffold_340_9
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8874..9635
DNA (762bp) protein (254aa)
hypothetical protein Tax=Catelliglobosispora koreensis RepID=UPI00037167BD
GntR family transcriptional regulator {ECO:0000313|EMBL:ETK33125.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
GntR family transcriptional regulator
PLM1_60_b1_redo_sep16_scaffold_340_10
Streptomyces davawensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9641..10942
DNA (1302bp) protein (434aa)
Enolase superfamily member 1 (EC:5.-.-.-)
Enolase superfamily member 1 {ECO:0000313|EMBL:CCK25826.1}; EC=5.-.-.- {ECO:0000313|EMBL:CCK25826.1};; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces davawensis JCM 4913.;"
Enolase superfamily member 1 Tax=Streptomyces davawensis JCM 4913 RepID=K4QT58_9ACTO
PLM1_60_b1_redo_sep16_scaffold_340_11
Streptomyces viridochromogenes, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10939..11718
DNA (780bp) protein (260aa)
short-chain dehydrogenase Tax=Streptomyces vitaminophilus RepID=UPI0003668D0B
Putative 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase {ECO:0000313|EMBL:ELS58320.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces viridochromogenes Tue57.;"
short-chain dehydrogenase
PLM1_60_b1_redo_sep16_scaffold_340_12
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11957..13729)
DNA (1773bp) protein (591aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
Ribonuclease Y Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FCS2_VERMA
metal dependent phosphohydrolase
PLM1_60_b1_redo_sep16_scaffold_340_13
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14053..14628)
DNA (576bp) protein (192aa)
Regulatory protein RecX Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8JUS4_STREN
recombination regulator RecX
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC; 14057 / NRRL 8057).;"
PLM1_60_b1_redo_sep16_scaffold_340_14
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(14655..15716)
DNA (1062bp) protein (354aa)
recombinase RecA Tax=Actinokineospora enzanensis RepID=UPI00037AEA68
recA; Protein RecA
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
PLM1_60_b1_redo_sep16_scaffold_340_15
unknown

Not on your lists

comp(16036..16881)
DNA (846bp) protein (282aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_340_16
Frankia sp. CpI1-S, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16878..17045)
DNA (168bp) protein (56aa)
Uncharacterized protein Tax=Frankia alni (strain ACN14a) RepID=Q0RDW4_FRAAA
Uncharacterized protein {ECO:0000313|EMBL:KJE24673.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CpI1-S.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_340_17
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17116..18378)
DNA (1263bp) protein (421aa)
hypothetical protein Tax=Longispora albida RepID=UPI000368898B
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABV97287.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain CNS-205).;"
PLM1_60_b1_redo_sep16_scaffold_340_18
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18368..19510)
DNA (1143bp) protein (381aa)
acyl-CoA dehydrogenase Tax=Micromonospora sp. CNB394 RepID=UPI00037C647A
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:ADL45088.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM1_60_b1_redo_sep16_scaffold_340_19
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19564..20916)
DNA (1353bp) protein (451aa)
Transcriptional regulator, GntR family with aminotransferase domain protein Tax=Micromonospora sp. (strain L5) RepID=E8SAV2_MICSL
GntR family transcriptional regulator with aminotransferase domain-containing protein
Micromonospora carbonacea strain JXNU-1 contig1, whole genome shotgun sequence {ECO:0000313|EMBL:KIR65658.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
PLM1_60_b1_redo_sep16_scaffold_340_20
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20947..22206
DNA (1260bp) protein (420aa)
Putative uncharacterized protein Tax=Micromonospora sp. ATCC 39149 RepID=C4RDD5_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:EEP74088.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
GCN5-like N-acetyltransferase
PLM1_60_b1_redo_sep16_scaffold_340_21
unknown

Not on your lists

comp(22640..22798)
DNA (159bp) protein (53aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_340_22
Frankia sp. CcI6, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23132..27778
DNA (4647bp) protein (1549aa)
ATP dependent helicase, Lhr family {ECO:0000313|EMBL:ETA03337.1}; EC=3.6.4.- {ECO:0000313|EMBL:ETA03337.1};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. CcI6.;"
UPI0003D00F71 related cluster Tax=unknown RepID=UPI0003D00F71
DEAD/DEAH box helicase
PLM1_60_b1_redo_sep16_scaffold_340_23
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27813..28295
DNA (483bp) protein (161aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI000382A0D2
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EWM65313.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
N-acetyltransferase
PLM1_60_b1_redo_sep16_scaffold_340_24
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28344..29261)
DNA (918bp) protein (306aa)
Uncharacterized protein Tax=Micromonospora sp. (strain L5) RepID=E8S9V4_MICSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL45037.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM1_60_b1_redo_sep16_scaffold_340_25
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29420..30229
DNA (810bp) protein (270aa)
Endonuclease VIII {ECO:0000313|EMBL:CCH16684.1}; EC=3.2.2.23 {ECO:0000313|EMBL:CCH16684.1};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
DNA glycosylase Tax=Micromonospora sp. CNB394 RepID=UPI00037F11E1
PLM1_60_b1_redo_sep16_scaffold_340_26
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

30453..30788
DNA (336bp) protein (112aa)
Uncharacterized protein Tax=Oceanicaulis sp. HTCC2633 RepID=A3UI40_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KIF12947.1}; species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
YCII-related protein
PLM1_60_b1_redo_sep16_scaffold_340_27
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30789..32054
DNA (1266bp) protein (422aa)
hypothetical protein Tax=Actinomadura flavalba RepID=UPI0003798279
putative ECF subfamily RNA polymerase sigma-24 subunit
Putative RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADB75668.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM1_60_b1_redo_sep16_scaffold_340_28
unknown

Not on your lists

32117..32275
DNA (159bp) protein (53aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_340_29
Salinispora arenicola, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32428..33201)
DNA (774bp) protein (258aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI00035D18A9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABV97260.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora arenicola (strain CNS-205).;"
PLM1_60_b1_redo_sep16_scaffold_340_30
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33210..34049)
DNA (840bp) protein (280aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI00036C042E
phage shock protein A, PspA
Phage shock protein A, PspA {ECO:0000313|EMBL:AEA26769.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Displaying items 1-30 of 33 in total

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