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PLM1_60_b1_redo_sep16_scaffold_725

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_725_trna_1
unknown

Not on your lists

129..203
DNA (75bp)
transferRNA Pseudo
PLM1_60_b1_redo_sep16_scaffold_725_1
Rubinisphaera brasiliensis, Rubinisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(353..1267)
DNA (915bp) protein (305aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI000364B134
phytanoyl-CoA dioxygenase
Phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:ADY61290.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rubinisphaera.;" source="Rubinisphaera brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 /; NBRC 103401 / IFAM 1448) (Planctomyces brasiliensis).;"
PLM1_60_b1_redo_sep16_scaffold_725_2
Kutzneria sp. 744, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1264..2271)
DNA (1008bp) protein (336aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria sp. 744.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase Tax=Halanaerobium praevalens (strain ATCC 33744 / DSM 2228 / GSL) RepID=E3DS29_HALPG
PLM1_60_b1_redo_sep16_scaffold_725_3
RLO_PLX_64_10, Bacteria

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comp(2512..4014)
DNA (1503bp) protein (501aa)
Putative uncharacterized protein Tax=Gordonia terrae NBRC 100016 RepID=H5UI98_9ACTO
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM1_60_b1_redo_sep16_scaffold_725_4
unknown

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comp(4041..4718)
DNA (678bp) protein (226aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_725_5
unknown

Not on your lists

comp(5228..5485)
DNA (258bp) protein (86aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_725_6
unknown

Not on your lists

comp(5723..6121)
DNA (399bp) protein (133aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_725_7
Streptomonospora alba, Streptomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6541..7761)
DNA (1221bp) protein (407aa)
hypothetical protein Tax=Nocardiopsis valliformis RepID=UPI00034B8825
DNA-binding protein {ECO:0000313|EMBL:KIH96649.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Streptomonospora.;" source="Streptomonospora alba.;"
helix-hairpin-helix DNA-binding motif-containing protein
PLM1_60_b1_redo_sep16_scaffold_725_8
Nocardia farcinica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7758..8072)
DNA (315bp) protein (105aa)
Uncharacterized protein Tax=Nocardia farcinica (strain IFM 10152) RepID=Q5YZD6_NOCFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD56455.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia farcinica (strain IFM 10152).;"
PLM1_60_b1_redo_sep16_scaffold_725_9
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8385..9044)
DNA (660bp) protein (220aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI0003652907
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGZ40716.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM1_60_b1_redo_sep16_scaffold_725_10
unknown

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comp(9044..9418)
DNA (375bp) protein (125aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_725_11
Tetrasphaera jenkinsii, Tetrasphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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9543..9998
DNA (456bp) protein (152aa)
Putative uncharacterized protein Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8SLK7_ACTS5
Uncharacterized protein {ECO:0000313|EMBL:CCI51268.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera jenkinsii Ben 74.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_725_12
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9995..10525
DNA (531bp) protein (177aa)
Uncharacterized protein Tax=Mycobacterium canettii CIPT 140070017 RepID=L0QY99_9MYCO
Uncharacterized protein {ECO:0000313|EMBL:ETK32251.1}; Flags: Fragment;; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_725_13
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10606..11547
DNA (942bp) protein (314aa)
Zinc finger, SWIM domain protein Tax=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) RepID=A4X8I6_SALTO
Micromonospora carbonacea strain JXNU-1 contig3, whole genome shotgun sequence {ECO:0000313|EMBL:KIR60979.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
zinc finger SWIM domain-containing protein
PLM1_60_b1_redo_sep16_scaffold_725_14
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11509..13194)
DNA (1686bp) protein (562aa)
Putative Polysaccharide deacetylase Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RS07_BLASD
Uncharacterized protein {ECO:0000313|EMBL:EWT05841.1}; species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;"
putative Polysaccharide deacetylase
PLM1_60_b1_redo_sep16_scaffold_725_15
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13475..14125)
DNA (651bp) protein (217aa)
Uncharacterized protein Tax=Micromonospora RepID=E8S305_MICSL
Membrane protein {ECO:0000313|EMBL:EWM65755.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_725_16
unknown

Not on your lists

14184..14444
DNA (261bp) protein (87aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_725_17
Nocardia seriolae, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14603..15823
DNA (1221bp) protein (407aa)
Uncharacterized protein Tax=Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745) RepID=F2R6B8_STRVP
DNA-binding protein {ECO:0000313|EMBL:GAM50375.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia seriolae.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_725_18
unknown

Not on your lists

16033..16224
DNA (192bp) protein (64aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_725_19
Salinispora tropica, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16480..16704)
DNA (225bp) protein (75aa)
HAD-superfamily hydrolase, subfamily IA, variant 1 Tax=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) RepID=A4X413_SALTO
HAD family hydrolase
HAD-superfamily hydrolase, subfamily IA, variant 1 {ECO:0000313|EMBL:ABP53613.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440).;"
PLM1_60_b1_redo_sep16_scaffold_725_20
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16658..17140)
DNA (483bp) protein (161aa)
HAD-superfamily hydrolase, subfamily IA, variant 1 Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y609_THEBD
HAD-superfamily hydrolase
HAD-superfamily hydrolase, subfamily IA, variant 1 {ECO:0000313|EMBL:ADG89425.1}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
PLM1_60_b1_redo_sep16_scaffold_725_21
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17322..19157)
DNA (1836bp) protein (612aa)
hypothetical protein Tax=Actinoplanes globisporus RepID=UPI0003667F19
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH94878.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM1_60_b1_redo_sep16_scaffold_725_22
R_Proteobacteria_53_8, Proteobacteria, Bacteria

Not on your lists

comp(19290..20117)
DNA (828bp) protein (276aa)
hypothetical protein Tax=Nonomuraea coxensis RepID=UPI00036DB133
ABC transporter
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
PLM1_60_b1_redo_sep16_scaffold_725_23
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

comp(20114..20842)
DNA (729bp) protein (243aa)
ABC transporter ATP-binding protein (EC:3.6.3.-)
ABC-type transport system, ATP-binding component {ECO:0000313|EMBL:CBK43025.1}; EC=3.6.3.- {ECO:0000313|EMBL:CBK43025.1};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
ABC-type transport system, ATP-binding component Tax=Candidatus Nitrospira defluvii RepID=D8PID8_9BACT
PLM1_60_b1_redo_sep16_scaffold_725_24
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20900..22135)
DNA (1236bp) protein (412aa)
RocD protein {ECO:0000313|EMBL:KIR63521.1}; EC=2.6.1.13 {ECO:0000313|EMBL:KIR63521.1};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI00037E30FA
ornithine aminotransferase
PLM1_60_b1_redo_sep16_scaffold_725_25
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22241..22762)
DNA (522bp) protein (174aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
Peptide deformylase Tax=Actinoplanes sp. N902-109 RepID=R4LG52_9ACTO
peptide deformylase
PLM1_60_b1_redo_sep16_scaffold_725_26
Amycolatopsis japonica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23114..25270
DNA (2157bp) protein (719aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis japonica.;"
Helicase Tax=Amycolatopsis decaplanina DSM 44594 RepID=M2YSW7_9PSEU
Hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_725_27
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25313..25471)
DNA (159bp) protein (53aa)
Epoxide hydrolase domain protein Tax=Frankia sp. EUN1f RepID=D3CTN8_9ACTO
Epoxide hydrolase domain protein {ECO:0000313|EMBL:EFC85928.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
epoxide hydrolase
Displaying 28 items

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