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PLM1_60_b1_redo_sep16_scaffold_1115

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_1115_1
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(106..525)
DNA (420bp) protein (140aa)
Putative uncharacterized protein Tax=Burkholderia xenovorans (strain LB400) RepID=Q13GP1_BURXL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE36748.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
PLM1_60_b1_redo_sep16_scaffold_1115_2
R_Acidobacteria_59_13, Acidobacteria, Bacteria

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comp(522..1706)
DNA (1185bp) protein (395aa)
fbpC; Fe3+ ABC transporter ATPase FbpC/AfuC (EC:3.6.3.30)
hypothetical protein Tax=Actinomadura flavalba RepID=UPI0003827528
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM1_60_b1_redo_sep16_scaffold_1115_3
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1784..3550)
DNA (1767bp) protein (589aa)
Binding-protein-dependent transport systems inner membrane component bin=GWD2_Deltaproteobacteria_55_8 species=Burkholderia sp. YI23 genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
binding-protein-dependent transport systems inner membrane component
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM1_60_b1_redo_sep16_scaffold_1115_4
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(3606..4223)
DNA (618bp) protein (206aa)
hypothetical protein Tax=Arthrobacter sp. 135MFCol5.1 RepID=UPI000377988A
Putative metal dependent phosphohydrolase {ECO:0000313|EMBL:EMA51593.1}; species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JCM 13552.;"
metal dependent phosphohydrolase
PLM1_60_b1_redo_sep16_scaffold_1115_5
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4268..5380)
DNA (1113bp) protein (371aa)
Iron-binding periplasmic protein bin=GWD2_Deltaproteobacteria_55_8 species=Ramlibacter tataouinensis genus=Ramlibacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
extracellular solute-binding protein
Tax=GWD2_Deltaproteobacteria_55_8_curated
PLM1_60_b1_redo_sep16_scaffold_1115_6
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6027..6812)
DNA (786bp) protein (262aa)
hypothetical protein Tax=Rhizobium giardinii RepID=UPI0003645965
Acetate operon repressor {ECO:0000313|EMBL:KEC80540.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
transcriptional regulator, IclR family
PLM1_60_b1_redo_sep16_scaffold_1115_7
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

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7148..8041
DNA (894bp) protein (298aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
PLM1_60_b1_redo_sep16_scaffold_1115_8
Mycobacterium smegmatis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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8089..9063
DNA (975bp) protein (325aa)
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component alpha subunit Tax=Mycobacterium smegmatis JS623 RepID=L0IYR6_MYCSM
pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component alpha subunit
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component alpha subunit {ECO:0000313|EMBL:AGB23472.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium smegmatis JS623.;"
PLM1_60_b1_redo_sep16_scaffold_1115_9
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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9060..10049
DNA (990bp) protein (330aa)
branched-chain alpha-keto acid dehydrogenase E1 component (EC:1.2.4.4)
Branched-chain alpha-keto acid dehydrogenase E1 component {ECO:0000313|EMBL:ABJ81365.1}; EC=1.2.4.4 {ECO:0000313|EMBL:ABJ81365.1};; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Branched-chain alpha-keto acid dehydrogenase E1 component Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02C51_SOLUE
PLM1_60_b1_redo_sep16_scaffold_1115_10
Rhodococcus equi, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(10084..12918)
DNA (2835bp) protein (945aa)
Putative FAD-dependent oxidoreductase Tax=Rhodococcus equi (strain 103S) RepID=E4WBR2_RHOE1
FAD-dependent oxidoreductase
Putative FAD-dependent oxidoreductase {ECO:0000313|EMBL:CBH46364.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus equi (strain 103S) (Corynebacterium equi).;"
PLM1_60_b1_redo_sep16_scaffold_1115_11

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comp(12915..13808)
DNA (894bp) protein (298aa)
Putative uncharacterized protein Tax=uncultured marine bacterium 1n22 RepID=D2DIR0_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ACX49748.1}; species="Bacteria; environmental samples.;" source="uncultured marine bacterium 1n22.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1115_12
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(13777..14787)
DNA (1011bp) protein (337aa)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase Tax=Oceanicola sp. S124 RepID=UPI000255902F
5-carboxymethyl-2-hydroxymuconate delta-isomerase {ECO:0000313|EMBL:EMA48163.1}; species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM 8989.;"
putative hydrolase
PLM1_60_b1_redo_sep16_scaffold_1115_13
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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15254..15847
DNA (594bp) protein (198aa)
NADPH-dependent FMN reductase Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RNE6_BLASD
NADPH-dependent FMN reductase
NADPH-dependent FMN reductase {ECO:0000313|EMBL:CCG03893.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
PLM1_60_b1_redo_sep16_scaffold_1115_14
Streptomyces venezuelae, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(15844..16098)
DNA (255bp) protein (85aa)
Uncharacterized protein Tax=Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745) RepID=F2RBC0_STRVP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA54248.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 /; JCM 4526 / NBRC 13096 / PD 04745).;"
PLM1_60_b1_redo_sep16_scaffold_1115_15
unknown

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comp(16095..16304)
DNA (210bp) protein (70aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_1115_16
unknown

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16592..16858
DNA (267bp) protein (89aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_1115_17
unknown

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17042..17206
DNA (165bp) protein (55aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_1115_18
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17582..18439
DNA (858bp) protein (286aa)
Uncharacterized protein Tax=Micromonospora lupini str. Lupac 08 RepID=I0L3Z1_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CCH18538.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1115_19
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18533..18751)
DNA (219bp) protein (73aa)
LuxR family transcriptional regulator Tax=Streptomyces sp. CNB091 RepID=UPI00037ADBC1
Two-component system response regulator
Regulator {ECO:0000313|EMBL:KJK50578.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
PLM1_60_b1_redo_sep16_scaffold_1115_20
Streptomyces bingchenggensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(18804..19841)
DNA (1038bp) protein (346aa)
Integrase catalytic region Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7BWC3_STRBB
integrase catalytic region
Integrase catalytic region {ECO:0000313|EMBL:ADI11833.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bingchenggensis (strain BCW-1).;"
PLM1_60_b1_redo_sep16_scaffold_1115_21

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19866..20099
DNA (234bp) protein (78aa)
hypothetical protein, partial Tax=actinobacterium SCGC AAA023-J06 RepID=UPI000368FAAB
Uncharacterized protein {ECO:0000313|EMBL:KGA14509.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="freshwater metagenome.;"
Displaying 21 items

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