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PLM1_60_b1_redo_sep16_scaffold_1384

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_1384_1
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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600..1802
DNA (1203bp) protein (401aa)
Arginine deiminase {ECO:0000256|HAMAP-Rule:MF_00242, ECO:0000256|SAAS:SAAS00092997}; Short=ADI {ECO:0000256|HAMAP-Rule:MF_00242};; EC=3.5.3.6 {ECO:0000256|HAMAP-Rule:MF_00242, ECO:0000256|SAAS:SAAS00092997};; Arginine dihydrolase {ECO:0000256|HAMAP-Rule:MF_00242}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
Arginine deiminase Tax=Micromonospora lupini str. Lupac 08 RepID=I0LDF8_9ACTO
putative arginine deiminase
PLM1_60_b1_redo_sep16_scaffold_1384_2
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1847..2722)
DNA (876bp) protein (292aa)
Uncharacterized protein Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F481_VERMA
Uncharacterized protein {ECO:0000313|EMBL:EXG79043.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1384_3
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2719..4287)
DNA (1569bp) protein (523aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
ATP-binding region ATPase domain protein Tax=Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 / NBRC 16125 / INA 9442) RepID=D9T3W0_MICAI
ATP-binding region ATPase domain-containing protein
PLM1_60_b1_redo_sep16_scaffold_1384_4
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(4319..5158)
DNA (840bp) protein (280aa)
hypothetical protein Tax=Streptomyces scabrisporus RepID=UPI0003763735
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:EXG79041.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
glycerophosphoryl diester phosphodiesterase
PLM1_60_b1_redo_sep16_scaffold_1384_5
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(5531..5950)
DNA (420bp) protein (140aa)
hypothetical protein Tax=Longispora albida RepID=UPI0003615607
Rhodanese-related sulfurtransferase {ECO:0000313|EMBL:EXG79040.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1384_6
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(6010..7143)
DNA (1134bp) protein (378aa)
Putative cell envelope-related transcriptional attenuator Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0HCR9_ACTM4
Transcriptional attenuator, LytR family {ECO:0000313|EMBL:EXG79002.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
putative cell envelope-related transcriptional attenuator
PLM1_60_b1_redo_sep16_scaffold_1384_7
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(7264..8346)
DNA (1083bp) protein (361aa)
Transcription attenuator lytR Tax=Actinoplanes sp. N902-109 RepID=R4M284_9ACTO
Transcriptional attenuator, LytR family {ECO:0000313|EMBL:EXG79038.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
transcription attenuator lytR
PLM1_60_b1_redo_sep16_scaffold_1384_8
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(8533..9504)
DNA (972bp) protein (324aa)
NAD-dependent epimerase/dehydratase Tax=Micromonospora lupini str. Lupac 08 RepID=I0LDE9_9ACTO
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:EXG79037.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
NAD-dependent epimerase/dehydratase
PLM1_60_b1_redo_sep16_scaffold_1384_9
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(9714..11414)
DNA (1701bp) protein (567aa)
Uncharacterized symporter ywcA Tax=Micromonospora lupini str. Lupac 08 RepID=I0LDE8_9ACTO
Putative symporter {ECO:0000313|EMBL:EXG79036.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
sodium solute transporter superfamily protein
PLM1_60_b1_redo_sep16_scaffold_1384_10
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(11411..11773)
DNA (363bp) protein (121aa)
Uncharacterized protein Tax=Verrucosispora maris (strain AB-18-032) RepID=F4F471_VERMA
Micromonospora carbonacea strain JXNU-1 contig1, whole genome shotgun sequence {ECO:0000313|EMBL:KIR64322.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1384_11
Kineococcus radiotolerans, Kineococcus, Kineosporiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12200..12460
DNA (261bp) protein (87aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI00036AD265
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS05701.1}; species="Bacteria; Actinobacteria; Kineosporiales; Kineosporiaceae; Kineococcus.;" source="Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 /; SRS30216).;"
PLM1_60_b1_redo_sep16_scaffold_1384_12
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12614..14785
DNA (2172bp) protein (724aa)
Uncharacterized protein Tax=Micromonospora RepID=E8S2R8_MICSL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL43676.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM1_60_b1_redo_sep16_scaffold_1384_13
Actinoplanes sp. SE50/110, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14934..16262
DNA (1329bp) protein (443aa)
YugS-like uncharacterized protein Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8S4M5_ACTS5
hypothetical protein
YugS-like uncharacterized protein {ECO:0000313|EMBL:AEV81072.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110).;"
PLM1_60_b1_redo_sep16_scaffold_1384_14
Micromonospora lupini, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16259..17401
DNA (1143bp) protein (381aa)
Uncharacterized protein Tax=Micromonospora lupini str. Lupac 08 RepID=I0LEF1_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CCH22198.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora lupini str. Lupac 08.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1384_15
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17432..18016)
DNA (585bp) protein (195aa)
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
Deoxycytidine triphosphate deaminase Tax=Micromonospora sp. ATCC 39149 RepID=C4RIK0_9ACTO
deoxycytidine triphosphate deaminase
PLM1_60_b1_redo_sep16_scaffold_1384_trna_1
unknown

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18069..18139
DNA (71bp)
transferRNA Gly
PLM1_60_b1_redo_sep16_scaffold_1384_16
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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18232..18759
DNA (528bp) protein (176aa)
Putative GCN5-related N-acetyltransferase Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W2Q8_9ACTO
putative GCN5-related N-acetyltransferase
Putative GCN5-related N-acetyltransferase {ECO:0000313|EMBL:AGZ43414.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM1_60_b1_redo_sep16_scaffold_1384_17
Nocardioides luteus, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19191..19439
DNA (249bp) protein (83aa)
hypothetical protein Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI000262666A
Uncharacterized protein {ECO:0000313|EMBL:KJR06546.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides luteus.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1384_18
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

19436..19810
DNA (375bp) protein (125aa)
Putative uncharacterized protein Tax=Frankia sp. EUN1f RepID=D3D5M5_9ACTO bin=RBG2 species=Frankia sp. EUN1f genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=RBG2 organism_group=Chloroflexi
Uncharacterized protein {ECO:0000313|EMBL:KIJ77709.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1384_19
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19991..20479
DNA (489bp) protein (163aa)
Uncharacterized protein Tax=Streptomyces davawensis JCM 4913 RepID=K4QW62_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KHD73620.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1384_20
Streptomyces sp. NRRL S-104, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20745..20957)
DNA (213bp) protein (71aa)
Phage integrase Tax=Micromonospora sp. ATCC 39149 RepID=C4RIK4_9ACTO
Integrase {ECO:0000313|EMBL:KJY23284.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NRRL S-104.;"
int8; integrase
PLM1_60_b1_redo_sep16_scaffold_1384_21
Streptomyces niveus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21554..21907
DNA (354bp) protein (118aa)
deaminase reductase Tax=Frankia sp. Iso899 RepID=UPI0003B6689F
Uncharacterized protein {ECO:0000313|EMBL:EST25911.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces niveus NCIMB 11891.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_1384_22
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22350..22871)
DNA (522bp) protein (174aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI0003649152
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ADD43941.1}; species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
PLM1_60_b1_redo_sep16_scaffold_1384_23
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23038..23259)
DNA (222bp) protein (74aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI0003649152
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ACQ82304.1}; species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
PLM1_60_b1_redo_sep16_scaffold_1384_24
RBG_16_Acidobacteria_64_8_curated, Acidobacteria, Bacteria

Not on your lists

23467..24255
DNA (789bp) protein (263aa)
Uncharacterized protein Tax=Actinomadura madurae LIID-AJ290 RepID=U2NGU5_9ACTO
methyltransferase
Tax=RBG_16_Acidobacteria_64_8_curated
PLM1_60_b1_redo_sep16_scaffold_1384_25
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(24687..25412)
DNA (726bp) protein (242aa)
Uncharacterized protein Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CHH5_THET1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ43196.1}; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
PLM1_60_b1_redo_sep16_scaffold_1384_26
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25409..25897)
DNA (489bp) protein (163aa)
Uncharacterized protein Tax=Frankia alni (strain ACN14a) RepID=Q0RC39_FRAAA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ64989.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
PLM1_60_b1_redo_sep16_scaffold_1384_27
Beutenbergia cavernae, Beutenbergia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25937..26818)
DNA (882bp) protein (294aa)
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase Tax=Ruania albidiflava RepID=UPI0003B65627
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; species="Bacteria; Actinobacteria; Micrococcales; Beutenbergiaceae; Beutenbergia.;" source="Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432).;"
PLM1_60_b1_redo_sep16_scaffold_1384_28
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27083..27751)
DNA (669bp) protein (223aa)
Secreted protein Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8JJW8_STREN
secreted protein
Secreted protein {ECO:0000313|EMBL:AHH96878.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM1_60_b1_redo_sep16_scaffold_1384_29
Actinoplanes sp. SE50/110, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28794..28898)
DNA (105bp) protein (35aa)
transposase IS1533 Tax=Micromonospora sp. CNB394 RepID=UPI000379B475
Mini-circle putative transposase for IS117
Mini-circle putative transposase for IS117 {ECO:0000313|EMBL:AEV86046.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110).;"
Displaying 30 items

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