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PLM1_60_b1_redo_sep16_scaffold_2168

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_2168_1
unknown

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2..70
DNA (69bp) protein (23aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_2168_2
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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169..699
DNA (531bp) protein (177aa)
RNA-directed DNA polymerase (Reverse transcriptase) Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8B4R6_FRADG
RNA-directed DNA polymerase
RNA-directed DNA polymerase (Reverse transcriptase) {ECO:0000313|EMBL:AEH09120.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
PLM1_60_b1_redo_sep16_scaffold_2168_3
R_RIF_OD1_05_38_8, RIF-OD1-5, Parcubacteria, Bacteria

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comp(1137..1874)
DNA (738bp) protein (246aa)
fabG2; 3-oxoacyl-[acyl-carrier-protein] reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase Tax=Geobacillus RepID=C9RZR6_GEOSY
Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_05_38_8_curated
PLM1_60_b1_redo_sep16_scaffold_2168_4
Streptomyces sp. e14, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(1927..3231)
DNA (1305bp) protein (435aa)
radical SAM protein Tax=Streptomyces acidiscabies RepID=UPI000289CC99
Radical SAM domain-containing protein {ECO:0000313|EMBL:EFF88876.2}; Flags: Fragment;; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. e14.;"
radical SAM domain-containing protein
PLM1_60_b1_redo_sep16_scaffold_2168_5
Mycobacterium kansasii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3248..4708)
DNA (1461bp) protein (487aa)
Methyltransferase Tax=Mycobacterium kansasii ATCC 12478 RepID=U5WIV8_MYCKA
methyltransferase
Methyltransferase {ECO:0000313|EMBL:AGZ49088.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium kansasii ATCC 12478.;"
PLM1_60_b1_redo_sep16_scaffold_2168_6
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4705..6081)
DNA (1377bp) protein (459aa)
Putative oxygen-independent coproporphyrinogen III oxidase Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UEP9_MYXSD
putative oxygen-independent coproporphyrinogen III oxidase
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:AGC46087.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
PLM1_60_b1_redo_sep16_scaffold_2168_7
unknown

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comp(6223..6939)
DNA (717bp) protein (239aa)
hypothetical protein Tax=Janthinobacterium sp. CG3 RepID=UPI0003641A2D
PLM1_60_b1_redo_sep16_scaffold_2168_8
Pyrobaculum calidifontis, Pyrobaculum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

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comp(6959..8425)
DNA (1467bp) protein (489aa)
Threonine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00184}; EC=6.1.1.3 {ECO:0000255|HAMAP-Rule:MF_00184};; Threonyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00184}; Short=ThrRS {ECO:0000255|HAMAP-Rule:MF_00184};; species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum.;" source="Pyrobaculum calidifontis (strain JCM 11548 / VA1).;"
Threonine--tRNA ligase Tax=Pyrobaculum calidifontis (strain JCM 11548 / VA1) RepID=SYT_PYRCJ
aminoacyl-transfer RNA synthetase, class II
PLM1_60_b1_redo_sep16_scaffold_2168_9
RIFOXYD1_FULL_OD1_46_19_curated, Parcubacteria, Bacteria

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comp(8418..9761)
DNA (1344bp) protein (448aa)
glyoxylate reductase (EC:1.1.1.26)
putative D-2-hydroxyacid dehydrogenase bin=ACD18 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=ACD18 organism_group=OD1 (Parcubacteria) organism_desc= OD1
Tax=RIFOXYD1_FULL_OD1_46_19_curated
PLM1_60_b1_redo_sep16_scaffold_2168_10
Pyrococcus yayanosii, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(9833..11707)
DNA (1875bp) protein (625aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus yayanosii (strain CH1 / JCM 16557).;"
Threonine--tRNA ligase Tax=Pyrococcus yayanosii (strain CH1 / JCM 16557) RepID=F8AIR9_PYRYC
threonyl-tRNA synthetase
PLM1_60_b1_redo_sep16_scaffold_2168_11
unknown

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comp(11732..11911)
DNA (180bp) protein (60aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_2168_12
Mycobacterium gilvum, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(11981..13003)
DNA (1023bp) protein (341aa)
KAP P-loop domain protein Tax=Mycobacterium gilvum (strain PYR-GCK) RepID=A4T1U8_MYCGI
KAP P-loop domain-containing protein
KAP P-loop domain protein {ECO:0000313|EMBL:ABP45358.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium gilvum (strain PYR-GCK) (Mycobacterium flavescens; (strain ATCC 700033 / PYR-GCK)).;"
PLM1_60_b1_redo_sep16_scaffold_2168_13
unknown

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13655..13846
DNA (192bp) protein (64aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_2168_14
Frankia sp. BMG5.23, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(13927..14145)
DNA (219bp) protein (73aa)
ABC transporter related Tax=Frankia sp. (strain CcI3) RepID=Q2J9Q9_FRASC
ABC transporter
Excinuclease ATPase subunit {ECO:0000313|EMBL:KDA43034.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. BMG5.23.;"
Displaying 14 items

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