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PLM1_60_b1_redo_sep16_scaffold_2338

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_2338_1
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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2..334
DNA (333bp) protein (111aa)
TrkA domain-containing protein Tax=Actinoplanes sp. N902-109 RepID=R4LP00_9ACTO
TrkA domain-containing protein
TrkA domain-containing protein {ECO:0000313|EMBL:AGL20198.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
PLM1_60_b1_redo_sep16_scaffold_2338_2
Micromonospora sp. ATCC 39149, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(512..1228)
DNA (717bp) protein (239aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI00035FCC6F
Putative uncharacterized protein {ECO:0000313|EMBL:EEP74145.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. ATCC 39149.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_2338_3
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1225..1623)
DNA (399bp) protein (133aa)
OB-fold tRNA/helicase-type nucleic acid binding protein Tax=Actinoplanes globisporus RepID=UPI00036E6F07
DNA-binding protein {ECO:0000313|EMBL:KHD74761.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
tRNA/helicase-type nucleic acid-binding protein
PLM1_60_b1_redo_sep16_scaffold_2338_4
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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1804..2499
DNA (696bp) protein (232aa)
Uncharacterized protein Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CSV9_PSEUX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEA25258.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM1_60_b1_redo_sep16_scaffold_2338_5
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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comp(2639..3313)
DNA (675bp) protein (225aa)
Two component transcriptional regulator, winged helix family Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WEZ3_ACTMD
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EXG81144.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
winged helix family two component transcriptional regulator
PLM1_60_b1_redo_sep16_scaffold_2338_6
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3481..4170)
DNA (690bp) protein (230aa)
hypothetical protein Tax=Micromonospora sp. CNB394 RepID=UPI00037920F2
Micromonospora carbonacea strain JXNU-1 contig1, whole genome shotgun sequence {ECO:0000313|EMBL:KIR65706.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_2338_7
Verrucosispora maris, Verrucosispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(4214..4711)
DNA (498bp) protein (166aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Verrucosispora.;" source="Verrucosispora maris (strain AB-18-032).;"
Deoxyuridine 5'-triphosphate nucleotidohydrolase Tax=Verrucosispora maris (strain AB-18-032) RepID=F4FDV3_VERMA
deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
PLM1_60_b1_redo_sep16_scaffold_2338_8
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4797..5273
DNA (477bp) protein (159aa)
Uncharacterized protein Tax=Actinoplanes sp. N902-109 RepID=R4LLE4_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGL20202.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
PLM1_60_b1_redo_sep16_scaffold_2338_9
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5358..6122)
DNA (765bp) protein (255aa)
Uncharacterized protein Tax=Actinoplanes friuliensis DSM 7358 RepID=U5W8I6_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGZ45317.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM1_60_b1_redo_sep16_scaffold_2338_10
Actinoplanes missouriensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(6190..6492)
DNA (303bp) protein (101aa)
Uncharacterized protein Tax=Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64 / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431) RepID=I0HGD7_ACTM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL92074.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes missouriensis (strain ATCC 14538 / DSM 43046 / CBS 188.64; / JCM 3121 / NCIMB 12654 / NBRC 102363 / 431).;"
PLM1_60_b1_redo_sep16_scaffold_2338_11
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6791..7891
DNA (1101bp) protein (367aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
hypothetical protein Tax=Amycolatopsis nigrescens RepID=UPI00035D5366
ribosome-associated GTPase
PLM1_60_b1_redo_sep16_scaffold_2338_12
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8022..9074
DNA (1053bp) protein (351aa)
Predicted aminoglycoside phosphotransferase Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RR85_BLASD
aminoglycoside phosphotransferase
Predicted aminoglycoside phosphotransferase {ECO:0000313|EMBL:CCG04165.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
PLM1_60_b1_redo_sep16_scaffold_2338_13
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9168..9680
DNA (513bp) protein (171aa)
Uncharacterized protein Tax=Micromonospora RepID=E8SBU9_MICSL
Micromonospora carbonacea strain JXNU-1 contig1, whole genome shotgun sequence {ECO:0000313|EMBL:KIR65702.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_2338_14
Micromonospora aurantiaca, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9677..10465)
DNA (789bp) protein (263aa)
inositol-phosphate phosphatase Tax=Micromonospora sp. CNB394 RepID=UPI00035DF100
inositol monophosphatase
Inositol monophosphatase {ECO:0000313|EMBL:ADL45150.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora aurantiaca (strain ATCC 27029 / DSM 43813 / JCM 10878 /; NBRC 16125 / INA 9442).;"
PLM1_60_b1_redo_sep16_scaffold_2338_15
Salinispora tropica, Salinispora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10795..12315
DNA (1521bp) protein (507aa)
RNA polymerase sigma factor Tax=Actinoplanes globisporus RepID=UPI000379E783
RNA polymerase sigma factor
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Salinispora.;" source="Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440).;"
PLM1_60_b1_redo_sep16_scaffold_2338_16
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12547..13458)
DNA (912bp) protein (304aa)
hypothetical protein Tax=Salinispora pacifica RepID=UPI000382550F
Uncharacterized protein {ECO:0000313|EMBL:EWC64488.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
DNA methylase N-4/N-6 domain-containing protein
PLM1_60_b1_redo_sep16_scaffold_2338_17
Mycobacterium nebraskense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13486..14304
DNA (819bp) protein (273aa)
Phage integrase family protein Tax=Nocardioides sp. CF8 RepID=R7XY57_9ACTO
Integrase {ECO:0000313|EMBL:KKC01556.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium nebraskense.;"
phage integrase family protein
Displaying 17 items

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