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PLM1_60_b1_redo_sep16_scaffold_11

Search features with annotation key words

Displaying items 1-30 of 190 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_11_16S_1
unknown

Not on your lists

comp(1..873)
DNA (873bp)
16S ribosomal RNA (16S rRNA)
PLM1_60_b1_redo_sep16_scaffold_11_1
Chthonomonas calidirosea, Chthonomonas, Chthonomonadales, Chthonomonadetes, Armatimonadetes, Bacteria

Not on your lists

comp(1701..2966)
DNA (1266bp) protein (422aa)
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; species="Bacteria; Armatimonadetes; Chthonomonadetes; Chthonomonadales; Chthonomonadaceae; Chthonomonas.;" source="Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49).;"
tyrosyl-tRNA synthetase Tax=Frankia sp. Iso899 RepID=UPI0003B6C0EA
PLM1_60_b1_redo_sep16_scaffold_11_2
RBG_16_Chloroflexi_68_14_curated, Chloroflexi, Bacteria

Not on your lists

comp(3349..4644)
DNA (1296bp) protein (432aa)
methyltransferase small
Methyltransferase small bin=GWB1_Spirochaetes_59_5 species=Spirochaeta smaragdinae genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
Tax=RBG_16_Chloroflexi_68_14_curated
PLM1_60_b1_redo_sep16_scaffold_11_3
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

5011..7620
DNA (2610bp) protein (870aa)
penicillin-binding protein 1A (EC:2.4.1.129)
Putative Membrane carboxypeptidase (Penicillin-binding protein) Tax=Candidatus Microthrix parvicella RN1 RepID=R4YZ67_9ACTN
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_11_4
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7685..8329)
DNA (645bp) protein (215aa)
DNA-3-methyladenine glycosylase (EC:3.2.2.21)
Putative 3-methyladenine DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097343}; EC=3.2.2.- {ECO:0000256|HAMAP-Rule:MF_00527, ECO:0000256|SAAS:SAAS00097340};; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
hypothetical protein Tax=Actinomadura atramentaria RepID=UPI000364753F
PLM1_60_b1_redo_sep16_scaffold_11_5
Streptomyces glaucescens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8326..10089)
DNA (1764bp) protein (588aa)
PHP domain protein Tax=Saccharomonospora paurometabolica YIM 90007 RepID=G4IXB8_9PSEU
PHP domain-containing protein
PHP domain-containing protein {ECO:0000313|EMBL:AIR96599.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces glaucescens.;"
PLM1_60_b1_redo_sep16_scaffold_11_6
unknown

Not on your lists

comp(10118..10738)
DNA (621bp) protein (207aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_11_7
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(10746..11678)
DNA (933bp) protein (311aa)
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase, catabolic Tax=Frankia sp. (strain CcI3) RepID=Q2J864_FRASC
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_11_8
RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11662..12069)
DNA (408bp) protein (136aa)
DNA-binding response regulator Tax=Synechococcus sp. (strain JA-3-3Ab) RepID=Q2JUP9_SYNJA
winged helix family two component transcriptional regulator
Tax=RIFOXYD12_FULL_Deltaproteobacteria_57_12_curated
PLM1_60_b1_redo_sep16_scaffold_11_9
Peptococcaceae bacterium BRH_c8a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12497..13708)
DNA (1212bp) protein (404aa)
hypothetical protein Tax=Desulfurispora thermophila RepID=UPI00037D1A55
Arginine biosynthesis bifunctional protein ArgJ {ECO:0000256|HAMAP-Rule:MF_01106}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c8a.;"
arginine biosynthesis bifunctional protein ArgJ
PLM1_60_b1_redo_sep16_scaffold_11_10
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13878..16388)
DNA (2511bp) protein (837aa)
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
phenylalanyl-tRNA synthetase subunit beta Tax=Streptomyces vitaminophilus RepID=UPI0003623638
PLM1_60_b1_redo_sep16_scaffold_11_11
Frankia alni, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(16706..17767)
DNA (1062bp) protein (354aa)
pheS; phenylalanine tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia alni (strain ACN14a).;"
Phenylalanine--tRNA ligase alpha subunit Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AZV1_FRADG
PLM1_60_b1_redo_sep16_scaffold_11_12
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17871..18935)
DNA (1065bp) protein (355aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
PAS/PAC sensor signal transduction histidine kinase Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y1Z4_THEBD
PAS/PAC sensor signal transduction histidine kinase
PLM1_60_b1_redo_sep16_scaffold_11_13
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18928..19752)
DNA (825bp) protein (275aa)
tRNA/rRNA methyltransferase (SpoU) Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A1M0_THECD
tRNA/rRNA methyltransferase SpoU
tRNA/rRNA methyltransferase (SpoU) {ECO:0000313|EMBL:ACY97708.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
PLM1_60_b1_redo_sep16_scaffold_11_14
Propionibacterium propionicum, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(19883..20248)
DNA (366bp) protein (122aa)
50S ribosomal protein L20 Tax=Propionibacterium propionicum (strain F0230a) RepID=I6XUN3_PROPF
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium propionicum (strain F0230a).;"
PLM1_60_b1_redo_sep16_scaffold_11_15
uncultured actinobacterium HF4000_04C13, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(20336..20530)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 Tax=uncultured actinobacterium HF4000_04C13 RepID=E0XVC8_9ACTN
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; species="Bacteria; Actinobacteria; environmental samples.;" source="uncultured actinobacterium HF4000_04C13.;"
50S ribosomal protein L35
PLM1_60_b1_redo_sep16_scaffold_11_16
Thermobifida fusca, Thermobifida, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20570..21175)
DNA (606bp) protein (202aa)
Translation initiation factor IF-3 Tax=Micromonospora sp. ATCC 39149 RepID=C4RHS9_9ACTO
translation initiation factor 3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Thermobifida.;" source="Thermobifida fusca (strain YX).;"
PLM1_60_b1_redo_sep16_scaffold_11_17
RBG_13_Actinobacteria_35_12_curated, Actinobacteria, Bacteria

Not on your lists

21580..22110
DNA (531bp) protein (177aa)
Uncharacterized protein Tax=Gordonia soli NBRC 108243 RepID=M0QQP8_9ACTO
Type II secretory pathway, component PulK
Tax=RBG_13_Actinobacteria_35_12_curated
PLM1_60_b1_redo_sep16_scaffold_11_18
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(22399..22602)
DNA (204bp) protein (68aa)
Conserved domain protein Tax=Nocardioidaceae bacterium Broad-1 RepID=E9USK4_9ACTO
cspD; cold shock-like protein CspD
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_11_19
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22853..23728)
DNA (876bp) protein (292aa)
ATP phosphoribosyltransferase (EC:2.4.2.17)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_00079};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_00079};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_00079, ECO:0000256|SAAS:SAAS00046302};; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
ATP phosphoribosyltransferase Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A813_THECD
PLM1_60_b1_redo_sep16_scaffold_11_20
Kyrpidia tusciae, Kyrpidia, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(23741..24214)
DNA (474bp) protein (158aa)
6,7-dimethyl-8-ribityllumazine synthase (EC:2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Kyrpidia.;" source="Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) (Bacillus; tusciae).;"
6,7-dimethyl-8-ribityllumazine synthase Tax=Kyrpidia tusciae (strain DSM 2912 / NBRC 15312 / T2) RepID=D5WQB4_KYRT2
PLM1_60_b1_redo_sep16_scaffold_11_21

Not on your lists

comp(24258..25532)
DNA (1275bp) protein (425aa)
Riboflavin biosynthesis protein RibBA Tax=uncultured bacterium A1Q1_fos_862 RepID=L7VZM5_9BACT
Riboflavin biosynthesis protein RibBA {ECO:0000256|HAMAP-Rule:MF_01283, ECO:0000256|SAAS:SAAS00280052}; species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_862.;"
GTP cyclohydrolase-2
PLM1_60_b1_redo_sep16_scaffold_11_22
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25529..26296)
DNA (768bp) protein (256aa)
riboflavin synthase subunit alpha (EC:2.5.1.9)
Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:AEH10603.1}; EC=2.5.1.9 {ECO:0000313|EMBL:AEH10603.1};; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
Riboflavin synthase, alpha subunit Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AV52_FRADG
PLM1_60_b1_redo_sep16_scaffold_11_23
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(26299..27762)
DNA (1464bp) protein (488aa)
diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC:1.1.1.193 3.5.4.26)
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI00037DC6C2
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_11_24
Actinotalea fermentans, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28345..30084
DNA (1740bp) protein (580aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QKV5_DESB2
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Uncharacterized protein {ECO:0000313|EMBL:KGM16398.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133.;"
PLM1_60_b1_redo_sep16_scaffold_11_25
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(30308..31243)
DNA (936bp) protein (312aa)
Response regulator receiver modulated diguanylate cyclase Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LUD7_ACIC1
response regulator receiver modulated diguanylate cyclase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_11_26
Nocardioides sp. JS614, Nocardioides, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31424..32737)
DNA (1314bp) protein (438aa)
Fmu (Sun) domain protein Tax=Nocardioides sp. (strain BAA-499 / JS614) RepID=A1SJG3_NOCSJ
Fmu (Sun) domain-containing protein
Fmu (Sun) domain protein {ECO:0000313|EMBL:ABL81948.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Nocardioides.;" source="Nocardioides sp. (strain BAA-499 / JS614).;"
PLM1_60_b1_redo_sep16_scaffold_11_27
Thermomonospora curvata, Thermomonospora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32734..33672)
DNA (939bp) protein (313aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; species="Bacteria; Actinobacteria; Streptosporangiales; Thermomonosporaceae; Thermomonospora.;" source="Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 /; NCIMB 10081).;"
Methionyl-tRNA formyltransferase Tax=Thermomonospora curvata (strain ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) RepID=D1A820_THECD
methionyl-tRNA formyltransferase
PLM1_60_b1_redo_sep16_scaffold_11_28
Kineosphaera limosa, Kineosphaera, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33899..34465)
DNA (567bp) protein (189aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; Actinobacteria; Micrococcales; Dermatophilaceae; Kineosphaera.;" source="Kineosphaera limosa NBRC 100340.;"
hypothetical protein Tax=Sporichthya polymorpha RepID=UPI0003662ECC
def; Peptide deformylase
PLM1_60_b1_redo_sep16_scaffold_11_29
Nocardiopsis alba, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34523..36457)
DNA (1935bp) protein (645aa)
Probable primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis alba (strain ATCC BAA-2165 / BE74).;"
Putative primosome assembly protein PriA Tax=Nocardiopsis alba (strain ATCC BAA-2165 / BE74) RepID=J7L9X6_NOCAA
putative primosome assembly protein PriA
Displaying items 1-30 of 190 in total

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