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PLM1_60_b1_redo_sep16_scaffold_24

Search features with annotation key words

Displaying items 1-30 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_24_1
unknown

Not on your lists

comp(1..690)
DNA (690bp) protein (230aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_24_2
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

765..998
DNA (234bp) protein (78aa)
Transposase Tax=Nitrolancetus hollandicus Lb RepID=I4EKZ1_9CHLR
Transposase {ECO:0000313|EMBL:CCF85353.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_24_3
Frankia sp. CcI3, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

995..1711
DNA (717bp) protein (239aa)
Putative transposase Tax=Frankia sp. (strain CcI3) RepID=Q2J5C7_FRASC
transposase
Putative transposase {ECO:0000313|EMBL:ABD13515.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain CcI3).;"
PLM1_60_b1_redo_sep16_scaffold_24_4
Kutzneria albida, Kutzneria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1993..2655)
DNA (663bp) protein (221aa)
hypothetical protein Tax=Amycolatopsis nigrescens RepID=UPI000377C234
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHH99409.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kutzneria.;" source="Kutzneria albida DSM 43870.;"
PLM1_60_b1_redo_sep16_scaffold_24_5
Streptomyces sp. AA4, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2607..5162)
DNA (2556bp) protein (852aa)
hypothetical protein Tax=Amycolatopsis nigrescens RepID=UPI000377FFB3
Predicted protein {ECO:0000313|EMBL:EFL10212.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
histidine kinase
PLM1_60_b1_redo_sep16_scaffold_24_6
unknown

Not on your lists

5382..5651
DNA (270bp) protein (90aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_24_7
unknown

Not on your lists

comp(5557..6291)
DNA (735bp) protein (245aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_24_8
Cystobacter fuscus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6324..7148
DNA (825bp) protein (275aa)
TolB protein, periplasmic protein Tax=Cystobacter fuscus DSM 2262 RepID=S9QED0_9DELT
TolB protein, periplasmic protein {ECO:0000313|EMBL:EPX59664.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter fuscus DSM 2262.;"
TolB protein
PLM1_60_b1_redo_sep16_scaffold_24_9
unknown

Not on your lists

7229..7924
DNA (696bp) protein (232aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_24_10
RBG_16_RIF_CHLX_72_14_curated, RIF-CHLX, Bacteria

Not on your lists

comp(8837..9148)
DNA (312bp) protein (104aa)
LuxR family transcriptional regulator bin=bin8_Chloro species=Actinoplanes globisporus genus=Actinoplanes taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin8_Chloro organism_group=Chloroflexi
LuxR family transcriptional regulator
Tax=RBG_16_RIF_CHLX_72_14_curated
PLM1_60_b1_redo_sep16_scaffold_24_11
Streptomyces ghanaensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9390..9875)
DNA (486bp) protein (162aa)
O-methyltransferase family 2 Tax=Streptomyces ghanaensis ATCC 14672 RepID=D6AA84_9ACTO
O-methyltransferase family 2 {ECO:0000313|EMBL:EFE72419.2}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ghanaensis ATCC 14672.;"
hydroxyneurosporene-O-methyltransferase
PLM1_60_b1_redo_sep16_scaffold_24_12
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10201..10440
DNA (240bp) protein (80aa)
Putative uncharacterized protein Tax=Frankia sp. (strain EAN1pec) RepID=A8LDF2_FRASN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW14026.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
PLM1_60_b1_redo_sep16_scaffold_24_13
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10462..10860)
DNA (399bp) protein (133aa)
Nitrile hydratase b-subunit Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CVV1_PSEUX
nitrile hydratase b-subunit
Nitrile hydratase b-subunit {ECO:0000313|EMBL:AEA25436.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM1_60_b1_redo_sep16_scaffold_24_14
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10857..11480)
DNA (624bp) protein (208aa)
nitrile hydratase subunit alpha (EC:4.2.1.84)
Nitrile hydratase, alpha subunit {ECO:0000313|EMBL:AEA23690.1}; EC=4.2.1.84 {ECO:0000313|EMBL:AEA23690.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Nitrile hydratase, alpha subunit Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CQZ1_PSEUX
PLM1_60_b1_redo_sep16_scaffold_24_15
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11560..12240)
DNA (681bp) protein (227aa)
nitrile hydratase (EC:4.2.1.84)
Nitrile hydratase {ECO:0000313|EMBL:AEA23691.1}; EC=4.2.1.84 {ECO:0000313|EMBL:AEA23691.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Nitrile hydratase Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CQZ2_PSEUX
PLM1_60_b1_redo_sep16_scaffold_24_16
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12237..13793)
DNA (1557bp) protein (519aa)
Amidase Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CQZ3_PSEUX
amidase
Amidase {ECO:0000313|EMBL:AEA23692.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
PLM1_60_b1_redo_sep16_scaffold_24_17
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14059..14667
DNA (609bp) protein (203aa)
hypothetical protein Tax=Actinoalloteichus spitiensis RepID=UPI0003816181
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADB76723.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Geodermatophilus.;" source="Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 /; G-20).;"
PLM1_60_b1_redo_sep16_scaffold_24_18
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14664..15098
DNA (435bp) protein (145aa)
long-chain-fatty-acid--CoA ligase (EC:6.2.1.3)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:AEA23824.1}; EC=6.2.1.3 {ECO:0000313|EMBL:AEA23824.1};; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Long-chain-fatty-acid--CoA ligase Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CWS2_PSEUX
PLM1_60_b1_redo_sep16_scaffold_24_19
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15095..15457
DNA (363bp) protein (121aa)
phaA; Poly(3-hydroxyalkanoate) polymerase 1 (EC:2.3.1.-)
Poly(3-hydroxyalkanoate) polymerase 1 {ECO:0000313|EMBL:CCG05398.1}; EC=2.3.1.- {ECO:0000313|EMBL:CCG05398.1};; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
Poly(3-hydroxyalkanoate) polymerase 1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RQN0_BLASD
PLM1_60_b1_redo_sep16_scaffold_24_20
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15478..16389
DNA (912bp) protein (304aa)
phaB; poly(3-hydroxyalkanoate) depolymerase (EC:3.1.1.-)
Poly(3-hydroxyalkanoate) depolymerase {ECO:0000313|EMBL:CCH89407.1}; EC=3.1.1.- {ECO:0000313|EMBL:CCH89407.1};; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
Poly(3-hydroxyalkanoate) depolymerase Tax=Modestobacter marinus (strain BC501) RepID=I4F194_MODMB
PLM1_60_b1_redo_sep16_scaffold_24_21
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16414..17583
DNA (1170bp) protein (390aa)
Acyl-CoA dehydrogenase Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RQM4_BLASD
ACX2; acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:CCG05392.1}; species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
PLM1_60_b1_redo_sep16_scaffold_24_22
Streptomyces rubellomurinus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17896..19599
DNA (1704bp) protein (568aa)
hypothetical protein Tax=Actinokineospora enzanensis RepID=UPI00036A3884
3'-5' exonuclease {ECO:0000313|EMBL:KJS56358.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rubellomurinus subsp. indigoferus.;"
DNA-directed DNA polymerase
PLM1_60_b1_redo_sep16_scaffold_24_23
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19812..20828)
DNA (1017bp) protein (339aa)
RNA polymerase sigma-70 factor, family protein Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9W9H1_9ACTO
RNA polymerase sigma-70 factor, family protein {ECO:0000313|EMBL:EFL20659.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces himastatinicus ATCC 53653.;"
sig7; RNA polymerase sigma factor
PLM1_60_b1_redo_sep16_scaffold_24_24
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21048..22262)
DNA (1215bp) protein (405aa)
hypothetical protein Tax=Actinopolymorpha alba RepID=UPI0003681715
2-polyprenyl-6-methoxyphenol hydroxylase-like oxidoreductase {ECO:0000313|EMBL:EXG79904.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_24_25
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22259..22885)
DNA (627bp) protein (209aa)
Transcriptional regulator, PadR family Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K6V6_SACES
Transcriptional regulator, PadR family
Transcriptional regulator, PadR family {ECO:0000313|EMBL:CCH33267.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
PLM1_60_b1_redo_sep16_scaffold_24_26
Streptomyces sp. NRRL F-4428, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23151..23774)
DNA (624bp) protein (208aa)
hypothetical protein Tax=Amycolatopsis balhimycina RepID=UPI00036B87BB
Hydrolase {ECO:0000313|EMBL:KJK48500.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NRRL F-4428.;"
hydrolase
PLM1_60_b1_redo_sep16_scaffold_24_27
unknown

Not on your lists

comp(23918..24175)
DNA (258bp) protein (86aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_24_28

Not on your lists

24657..25352
DNA (696bp) protein (232aa)
Uncharacterized protein Tax=uncultured bacterium esnapd4 RepID=S5TKD5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AGS49360.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium esnapd4.;"
hypothetical protein
PLM1_60_b1_redo_sep16_scaffold_24_29
Actinotalea fermentans, Actinotalea, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25582..26121
DNA (540bp) protein (180aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM16843.1}; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133.;"
PLM1_60_b1_redo_sep16_scaffold_24_30
RBG_16_RIF_CHLX_69_14_curated, RIF-CHLX, Bacteria

Not on your lists

26207..26890
DNA (684bp) protein (228aa)
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP Tax=uncultured candidate division OP1 bacterium RepID=H5SQV1_9BACT bin=RBG9 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG9 organism_group=Chloroflexi
OmpR family two-component response regulator
Tax=RBG_16_RIF_CHLX_69_14_curated
Displaying items 1-30 of 85 in total

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