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PLM1_60_b1_redo_sep16_scaffold_266

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Displaying items 1-30 of 39 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_266_1
unknown

Not on your lists

593..763
DNA (171bp) protein (57aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_266_2
BJP_S1_SUB10_Syntrophobacterales_50_21, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1740..2186
DNA (447bp) protein (149aa)
hypothetical protein Tax=Methylobacter marinus RepID=UPI00037AFA78
Polyketide cyclase/dehydrase
Tax=BJP_S1_SUB10_Syntrophobacterales_50_21
PLM1_60_b1_redo_sep16_scaffold_266_3
Streptomyces bingchenggensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2179..2757
DNA (579bp) protein (193aa)
TetR family transcriptional regulator Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7CD22_STRBB
TetR family transcriptional regulator
TetR family transcriptional regulator {ECO:0000313|EMBL:ADI10869.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bingchenggensis (strain BCW-1).;"
PLM1_60_b1_redo_sep16_scaffold_266_4
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2917..3564)
DNA (648bp) protein (216aa)
Uncharacterized protein Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DKN9_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHY45757.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
PLM1_60_b1_redo_sep16_scaffold_266_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3596..5062)
DNA (1467bp) protein (489aa)
(4Fe-4S) cluster-containing protein Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DMA0_SINAD
(4Fe-4S) cluster-containing protein
(4Fe-4S) cluster-containing protein {ECO:0000313|EMBL:AGA29940.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM1_60_b1_redo_sep16_scaffold_266_6
Rubrobacter radiotolerans, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5059..5802)
DNA (744bp) protein (248aa)
Fe-S oxidoreductase Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DMQ5_SINAD
Cysteine-rich domain
Cysteine-rich domain {ECO:0000313|EMBL:AHY45755.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter radiotolerans.;"
PLM1_60_b1_redo_sep16_scaffold_266_7
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(6020..6637)
DNA (618bp) protein (206aa)
Channel protein, hemolysin III family Tax=Frankia sp. (strain EuI1c) RepID=E3ITJ5_FRASU
hemolysin III family channel protein
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_266_8
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7099..7983)
DNA (885bp) protein (295aa)
methyltransferase Tax=Amycolatopsis methanolica RepID=UPI0003785EFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIJ26560.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
PLM1_60_b1_redo_sep16_scaffold_266_9
Streptomyces auratus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7983..8144)
DNA (162bp) protein (54aa)
RNA polymerase subunit sigma-24 Tax=Nocardiopsis gilva RepID=UPI0003496C61
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:EJJ03729.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces auratus AGR0001.;"
sig16; ECF subfamily RNA polymerase sigma factor
PLM1_60_b1_redo_sep16_scaffold_266_10
Stackebrandtia nassauensis, Stackebrandtia, Glycomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8596..9300)
DNA (705bp) protein (235aa)
hypothetical protein Tax=Salinispora arenicola RepID=UPI000372A373
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADD43704.1}; Flags: Precursor;; species="Bacteria; Actinobacteria; Glycomycetales; Glycomycetaceae; Stackebrandtia.;" source="Stackebrandtia nassauensis (strain DSM 44728 / NRRL B-16338 / NBRC; 102104 / LLR-40K-21).;"
PLM1_60_b1_redo_sep16_scaffold_266_11
CSP1_4_Chloroflexi, Gitt-GS-136, Chloroflexi, Bacteria

Not on your lists

comp(9379..10347)
DNA (969bp) protein (323aa)
alcohol dehydrogenase bin=bin8_Chloro species=Paenibacillus terrigena genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin8_Chloro organism_group=Chloroflexi
alcohol dehydrogenase
Tax=CSP1_4_Chloroflexi
PLM1_60_b1_redo_sep16_scaffold_266_12
Methanocella paludicola, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10442..11179)
DNA (738bp) protein (246aa)
Uncharacterized protein Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YZI6_METPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI61858.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 /; SANAE).;"
PLM1_60_b1_redo_sep16_scaffold_266_13
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(11184..11531)
DNA (348bp) protein (116aa)
Putative transcription regulator (PadR-like family) Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W4V9_UNCMA
PadR-like family transcriptional regulator
Putative transcription regulator (PadR-like family) {ECO:0000313|EMBL:CAJ36584.1}; species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50).;"
PLM1_60_b1_redo_sep16_scaffold_266_14
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(12187..13173)
DNA (987bp) protein (329aa)
Transcriptional regulator, MarR family Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3F9C4_CONWI
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ADB49091.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM1_60_b1_redo_sep16_scaffold_266_15
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13266..14537
DNA (1272bp) protein (424aa)
Amino acid transporter Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=G8XEG9_STREN
Amino acid transporter
Amino acid transporter {ECO:0000313|EMBL:AEW98351.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC; 14057 / NRRL 8057).;"
PLM1_60_b1_redo_sep16_scaffold_266_16
unknown

Not on your lists

14905..15087
DNA (183bp) protein (61aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_266_17
Streptomyces vietnamensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15754..16521
DNA (768bp) protein (256aa)
regulatory protein Tax=Streptomyces violaceoniger RepID=UPI0003C7597E
regulatory protein
Regulatory protein {ECO:0000313|EMBL:AJF67421.1}; species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces vietnamensis.;"
PLM1_60_b1_redo_sep16_scaffold_266_18
Streptosporangium roseum, Streptosporangium, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16582..17415
DNA (834bp) protein (278aa)
Uncharacterized protein Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2BF78_STRRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACZ88236.1}; species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Streptosporangium.;" source="Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 /; NI 9100).;"
PLM1_60_b1_redo_sep16_scaffold_266_19
unknown

Not on your lists

17584..17784
DNA (201bp) protein (67aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_266_20
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

comp(17923..19161)
DNA (1239bp) protein (413aa)
Ortho-succinylbenzoate-CoA synthetase Tax=Micromonospora sp. ATCC 39149 RepID=C4RCB4_9ACTO
AMP-dependent synthetase and ligase
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
PLM1_60_b1_redo_sep16_scaffold_266_21
Ferrimicrobium acidiphilum, Ferrimicrobium, Acidimicrobiales, Acidimicrobiia, Actinobacteria, Bacteria

Not on your lists

19264..20076
DNA (813bp) protein (271aa)
1,4-dihydroxy-2-naphthoyl-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934}; Short=DHNA-CoA synthase {ECO:0000256|HAMAP-Rule:MF_01934};; EC=4.1.3.36 {ECO:0000256|HAMAP-Rule:MF_01934};; species="Bacteria; Actinobacteria; Acidimicrobiia; Acidimicrobiales; Acidimicrobiaceae; Ferrimicrobium.;" source="Ferrimicrobium acidiphilum DSM 19497.;"
naphthoate synthase (EC:4.1.3.36)
dihydroxynaphthoic acid synthetase Tax=Nocardiopsis chromatogenes RepID=UPI00034910ED
PLM1_60_b1_redo_sep16_scaffold_266_22
marine actinobacterium MedAcidi-G3, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20082..20945
DNA (864bp) protein (288aa)
1,4-dihydroxy-2-naphthoate octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937}; Short=DHNA-octaprenyltransferase {ECO:0000256|HAMAP-Rule:MF_01937};; EC=2.5.1.74 {ECO:0000256|HAMAP-Rule:MF_01937};; species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G3.;"
1,4-dihydroxy-2-naphthoateoctaprenyltransferase Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2SHG1_GEOOG
1,4-dihydroxy-2-naphthoateoctaprenyltransferase
PLM1_60_b1_redo_sep16_scaffold_266_23
Chondromyces apiculatus, Chondromyces, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21127..21840)
DNA (714bp) protein (238aa)
Putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase {ECO:0000256|HAMAP-Rule:MF_01660}; Short=SHCHC synthase {ECO:0000256|HAMAP-Rule:MF_01660};; EC=4.2.99.20 {ECO:0000256|HAMAP-Rule:MF_01660};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;"
menH; putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC:4.2.99.20)
Putative 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase Tax=Ilumatobacter coccineus YM16-304 RepID=M5A1N5_9ACTN
PLM1_60_b1_redo_sep16_scaffold_266_24
Frankia symbiont of Datisca glomerata, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22105..23421)
DNA (1317bp) protein (439aa)
Uncharacterized protein Tax=Frankia symbiont subsp. Datisca glomerata RepID=F8AZA4_FRADG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH11633.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia symbiont subsp. Datisca glomerata.;"
PLM1_60_b1_redo_sep16_scaffold_266_25
unknown

Not on your lists

23846..24175
DNA (330bp) protein (110aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_266_26
Synechocystis sp. PCC 6714, Synechocystis, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(25214..25495)
DNA (282bp) protein (94aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Synechocystis.;" source="Synechocystis sp. (strain PCC 6714) (Aphanocapsa sp. (strain PCC; 6714)).;"
hypothetical protein Tax=Nocardiopsis baichengensis RepID=UPI000349D1DE
CRISPR-associated protein Cas2
PLM1_60_b1_redo_sep16_scaffold_266_27
Cellulomonas bogoriensis, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25522..27405)
DNA (1884bp) protein (628aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas bogoriensis 69B4 = DSM 16987.;"
hypothetical protein Tax=Nocardiopsis baichengensis RepID=UPI0003640740
cas1; CRISPR-associated protein Cas1
PLM1_60_b1_redo_sep16_scaffold_266_28
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27386..28126)
DNA (741bp) protein (247aa)
Uncharacterized protein Tax=Frankia sp. (strain EuI1c) RepID=E3IY75_FRASU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADP82673.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM1_60_b1_redo_sep16_scaffold_266_29
unknown

Not on your lists

28856..29881
DNA (1026bp) protein (342aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_266_30
Actinopolyspora erythraea, Actinopolyspora, Actinopolysporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29878..32331
DNA (2454bp) protein (818aa)
hypothetical protein Tax=Actinopolyspora halophila RepID=UPI000381B145
Uncharacterized protein {ECO:0000313|EMBL:KGI80402.1}; species="Bacteria; Actinobacteria; Actinopolysporales; Actinopolysporaceae; Actinopolyspora.;" source="Actinopolyspora erythraea.;"
RAMP superfamily protein probably involved in DNA repair
Displaying items 1-30 of 39 in total

View Taxonomy