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PLM1_60_b1_redo_sep16_scaffold_2077

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Displaying 16 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_b1_redo_sep16_scaffold_2077_1
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..262)
DNA (261bp) protein (87aa)
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
PLM1_60_b1_redo_sep16_scaffold_2077_2
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(531..1439)
DNA (909bp) protein (303aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037BB677
Uncharacterized protein {ECO:0000313|EMBL:ETX02403.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
PLM1_60_b1_redo_sep16_scaffold_2077_3
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1788..2792)
DNA (1005bp) protein (335aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_60_b1_redo_sep16_scaffold_2077_4
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2859..3698)
DNA (840bp) protein (280aa)
Hydroxycinnamoyl-CoA hydratase-lyase bin=GWD2_Deltaproteobacteria_55_8 species=Pseudomonas sp. HPB0071 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
p-hydroxycinnamoyl CoA hydratase/lyase
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_60_b1_redo_sep16_scaffold_2077_5
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3900..4910
DNA (1011bp) protein (337aa)
Uncharacterized protein bin=GWD2_Deltaproteobacteria_55_8 species=Synechococcus sp. PCC 7502 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_60_b1_redo_sep16_scaffold_2077_6
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5065..5943
DNA (879bp) protein (293aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_60_b1_redo_sep16_scaffold_2077_7
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6035..6229
DNA (195bp) protein (65aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM1_60_b1_redo_sep16_scaffold_2077_8
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6439..6729
DNA (291bp) protein (97aa)
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM1_60_b1_redo_sep16_scaffold_2077_9
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6872..7792)
DNA (921bp) protein (307aa)
pirin Tax=Hyphomicrobium zavarzinii RepID=UPI00036F297F
Pirin {ECO:0000313|EMBL:KJB94059.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
pirin domain-containing protein
PLM1_60_b1_redo_sep16_scaffold_2077_10
unknown

Not on your lists

comp(7912..8595)
DNA (684bp) protein (228aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_2077_11
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8726..9031)
DNA (306bp) protein (102aa)
Maleylacetoacetate isomerase bin=GWD2_Deltaproteobacteria_55_8 species=gamma proteobacterium NOR5-3 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
glutathione S-transferase-like protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
PLM1_60_b1_redo_sep16_scaffold_2077_12
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10257..11078
DNA (822bp) protein (274aa)
hypothetical protein Tax=Cupriavidus sp. WS RepID=UPI00037C9560
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:EIF33200.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
binding--dependent transport system inner membrane component family protein
PLM1_60_b1_redo_sep16_scaffold_2077_13
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11140..11937
DNA (798bp) protein (266aa)
hypothetical protein Tax=Cupriavidus sp. WS RepID=UPI0003780DA0
Nitrate ABC transporter ATPase {ECO:0000313|EMBL:KFE48973.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas syringae.;"
ABC transporter
PLM1_60_b1_redo_sep16_scaffold_2077_14
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12014..13000
DNA (987bp) protein (329aa)
nitrate ABC transporter substrate-binding protein Tax=Methylobacterium sp. 285MFTsu5.1 RepID=UPI000362D21A
Nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein {ECO:0000313|EMBL:GAN48161.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
Nitrate/sulfonate/bicarbonate ABC transporter periplasmic ligand-binding protein
PLM1_60_b1_redo_sep16_scaffold_2077_15
unknown

Not on your lists

comp(13837..14142)
DNA (306bp) protein (102aa)

This feature has no annotations

PLM1_60_b1_redo_sep16_scaffold_2077_16
Haliangium ochraceum, Haliangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14210..14509)
DNA (300bp) protein (100aa)
Transcriptional regulator, Crp/Fnr family Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LG24_HALO1
Crp/Fnr family transcriptional regulator
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ACY14626.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Kofleriaceae; Haliangium.;" source="Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2).;"
Displaying 16 items

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