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PLM1_60_coex_sep16_scaffold_15928

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_coex_sep16_scaffold_15928_1

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1..366
DNA (366bp) protein (122aa)
endonuclease (EC:3.1.-.-); K07460 putative endonuclease bin=GWC2_NOV_55_46 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
endonuclease (EC:3.1.-.-)
Marine sediment metagenome DNA, contig: S01H4_S20298 {ECO:0000313|EMBL:GAH14391.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM1_60_coex_sep16_scaffold_15928_2

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528..965
DNA (438bp) protein (146aa)
50S ribosomal protein L13 Tax=uncultured bacterium RepID=K2AZ05_9BACT
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplM; 50S ribosomal protein L13
PLM1_60_coex_sep16_scaffold_15928_3
RBG_13_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1022..1426
DNA (405bp) protein (135aa)
30S ribosomal protein S9 Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=RS9_PELCD
rpsI; 30S ribosomal protein S9
Tax=RBG_13_Deltaproteobacteria_52_11_curated
PLM1_60_coex_sep16_scaffold_15928_4
RBG_13_Deltaproteobacteria_51_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1613..2245
DNA (633bp) protein (211aa)
Elongation factor Ts Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CNQ6_DESK7
elongation factor Ts
Tax=RBG_13_Deltaproteobacteria_51_10_curated
PLM1_60_coex_sep16_scaffold_15928_5
GWC2_Pelobacteraceae_58_13_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2342..2968
DNA (627bp) protein (209aa)
Uridylate kinase bin=GWC2_Pelobacter_58_13 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Pelobacter_58_13 organism_group=Deltaproteobacteria organism_desc=Good +
pyrH; uridylate kinase
Tax=GWC2_Pelobacteraceae_58_13_curated
PLM1_60_coex_sep16_scaffold_15928_6
Geoalkalibacter ferrihydriticus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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2931..3062
DNA (132bp) protein (44aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter ferrihydriticus DSM 17813.;"
Uridylate kinase Tax=Thermincola potens (strain JR) RepID=D5XEZ4_THEPJ
uridylate kinase
PLM1_60_coex_sep16_scaffold_15928_7
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

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3065..3637
DNA (573bp) protein (191aa)
Ribosome-recycling factor Tax=Syntrophus aciditrophicus (strain SB) RepID=RRF_SYNAS
ribosome recycling factor
Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
PLM1_60_coex_sep16_scaffold_15928_8
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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3759..4514
DNA (756bp) protein (252aa)
undecaprenyl pyrophosphate synthase (EC:2.5.1.31)
Isoprenyl transferase Tax=Nitrospina gracilis 3/211 RepID=M1YXU0_9BACT
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PLM1_60_coex_sep16_scaffold_15928_9
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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4524..5303
DNA (780bp) protein (260aa)
cdsA; phosphatidate cytidylyltransferase (CDP-diacylglycerol synthase) (EC:2.7.7.41)
Phosphatidate cytidylyltransferase Tax=Nitrospina gracilis 3/211 RepID=M1ZA46_9BACT
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PLM1_60_coex_sep16_scaffold_15928_10
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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5370..6536
DNA (1167bp) protein (389aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
dxr; 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase bin=CD_OP8_4m species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
PLM1_60_coex_sep16_scaffold_15928_11
CSP1_5_NC10, NC10, Bacteria

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6631..7128
DNA (498bp) protein (166aa)
cinA; competence-damage inducible protein bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
competence/damage-inducible protein CinA
Tax=CSP1_5_NC10
PLM1_60_coex_sep16_scaffold_15928_12
RBG_13_Deltaproteobacteria_53_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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7262..7762
DNA (501bp) protein (167aa)
2'-5' RNA ligase bin=GWC2_Nitrospirae-rel_56_14 species=Dehalogenimonas lykanthroporepellens genus=Dehalogenimonas taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
2'-5' RNA ligase
Tax=RBG_13_Deltaproteobacteria_53_10_curated
PLM1_60_coex_sep16_scaffold_15928_13
RBG_19FT_COMBO_Zixibacteria_42_43_curated, Zixibacteria, Bacteria

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7821..8858
DNA (1038bp) protein (346aa)
Protein RecA Tax=candidate division ZIXI bacterium RBG-1 RepID=T0LIE5_9BACT
recA; recombinase A
Tax=RBG_19FT_COMBO_Zixibacteria_42_43_curated
PLM1_60_coex_sep16_scaffold_15928_14
Nitrospina gracilis, Nitrospina, Nitrospinales, Nitrospinia, Nitrospinae, Bacteria

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8900..9421
DNA (522bp) protein (174aa)
Regulatory protein RecX Tax=Nitrospina gracilis 3/211 RepID=M1Z400_9BACT
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; species="Bacteria; Nitrospinae; Nitrospinia; Nitrospinales; Nitrospinaceae; Nitrospina.;" source="Nitrospina gracilis (strain 3/211).;"
regulatory protein recX
Displaying 14 items

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