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PLM1_60_coex_sep16_scaffold_2906

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_coex_sep16_scaffold_2906_1
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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103..531
DNA (429bp) protein (143aa)
50S ribosomal protein L16 bin=GWC2_Nitrospirae_57_13 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
rplP; 50S ribosomal protein L16
Tax=RBG_16_Nitrospirae_64_22_curated
PLM1_60_coex_sep16_scaffold_2906_2
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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528..719
DNA (192bp) protein (64aa)
50S ribosomal protein L29 Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6QDQ7_9FIRM
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter subterraneus DSM 13965.;"
50S ribosomal protein L29
PLM1_60_coex_sep16_scaffold_2906_3
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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756..1037
DNA (282bp) protein (94aa)
30S ribosomal protein S17 Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SKZ1_THEM7
30S ribosomal protein S17
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
PLM1_60_coex_sep16_scaffold_2906_4
GWA2_Deltaproteobacteria_47_9_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1034..1402
DNA (369bp) protein (123aa)
50S ribosomal protein L14 Tax=Anaeromyxobacter RepID=RL14_ANAD2
rplN; 50S ribosomal protein L14
Tax=GWA2_Deltaproteobacteria_47_9_curated
PLM1_60_coex_sep16_scaffold_2906_5
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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1405..1749
DNA (345bp) protein (115aa)
50S ribosomal protein L24 Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R8H9_AMMDK
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
50S ribosomal protein L24
PLM1_60_coex_sep16_scaffold_2906_6
Pelotomaculum thermopropionicum, Pelotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1817..2362
DNA (546bp) protein (182aa)
50S ribosomal protein L5 Tax=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) RepID=A5D5G7_PELTS
rplE; 50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Pelotomaculum.;" source="Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI).;"
PLM1_60_coex_sep16_scaffold_2906_7
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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2599..2997
DNA (399bp) protein (133aa)
30S ribosomal protein S8 Tax=Alicyclobacillus acidocaldarius RepID=C8WTV9_ALIAD
30S ribosomal protein S8
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC; 27009 / DSM 446 / JCM 5260 / NBRC 15652 / NCIMB 11725 / NRRL B-14509 /; 104-1A) (Bacillus acidocaldarius).;"
PLM1_60_coex_sep16_scaffold_2906_8
RBG_13_Deltaproteobacteria_58_19_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3009..3236
DNA (228bp) protein (76aa)
50S ribosomal protein L6 Tax=Synechococcus sp. (strain JA-3-3Ab) RepID=RL6_SYNJA
Suspect SCG annotation. See neighboring gene [PLM1_60_coex_sep16_scaffold_2906_9].
rplF; 50S ribosomal protein L6
Tax=RBG_13_Deltaproteobacteria_58_19_curated
PLM1_60_coex_sep16_scaffold_2906_9
Mitsuokella sp. oral taxon 131, Mitsuokella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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3230..3544
DNA (315bp) protein (105aa)
50S ribosomal protein L6 Tax=Mitsuokella sp. oral taxon 131 str. W9106 RepID=U2SUP9_9FIRM
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Mitsuokella.;" source="Mitsuokella sp. oral taxon 131 str. W9106.;"
50S ribosomal protein L6
PLM1_60_coex_sep16_scaffold_2906_10
RLO_Entotheonella_69_37, Entotheonella, Bacteria

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3609..3884
DNA (276bp) protein (92aa)
50S ribosomal protein L18 Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=RL18_HELMI
rplR; 50S ribosomal protein L18
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM1_60_coex_sep16_scaffold_2906_11
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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3906..4436
DNA (531bp) protein (177aa)
30S ribosomal protein S5 Tax=uncultured Desulfofustis sp. PB-SRB1 RepID=V4JCZ4_9DELT
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
rpsE; 30S ribosomal protein S5
PLM1_60_coex_sep16_scaffold_2906_12
RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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4440..4631
DNA (192bp) protein (64aa)
ribosomal protein L30
50S ribosomal protein L30 bin=GWB2_Desulfobacterales_56_26 species=Desulfotalea psychrophila genus=Desulfotalea taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
Tax=RIFOXYD12_FULL_Deltaproteobacteria_53_23_curated
PLM1_60_coex_sep16_scaffold_2906_13
Caldanaerobacter subterraneus, Caldanaerobacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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4635..5084
DNA (450bp) protein (150aa)
50S ribosomal protein L15 Tax=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) RepID=RL15_THETN
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000255|HAMAP-Rule:MF_01341}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Caldanaerobacter.;" source="Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 /; JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis).;"
PLM1_60_coex_sep16_scaffold_2906_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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5077..6384
DNA (1308bp) protein (436aa)
hypothetical protein Tax=Nitrospina sp. SCGC AAA288-L16 RepID=UPI0003675620
secY; preprotein translocase subunit SecY
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PLM1_60_coex_sep16_scaffold_2906_15
RBG_16_Deltaproteobacteria_54_18_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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6425..7069
DNA (645bp) protein (215aa)
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=KAD_THEYD
Tax=RBG_16_Deltaproteobacteria_54_18_curated
PLM1_60_coex_sep16_scaffold_2906_16
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

Not on your lists

7079..7825
DNA (747bp) protein (249aa)
map; methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKJ0_9BACT
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PLM1_60_coex_sep16_scaffold_2906_17
Natranaerobius thermophilus, Natranaerobius, Natranaerobiales, Clostridia, Firmicutes, Bacteria

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7888..8106
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 Tax=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) RepID=B2A4G0_NATTJ
translation initiation factor 1 (bIF-1)
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; species="Bacteria; Firmicutes; Clostridia; Natranaerobiales; Natranaerobiaceae; Natranaerobius.;" source="Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 /; JW/NM-WN-LF).;"
PLM1_60_coex_sep16_scaffold_2906_18
RBG_13_Chloroflexi_60_13_curated, Chloroflexi, Bacteria

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8066..8233
DNA (168bp) protein (56aa)
50S ribosomal protein L36 Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CFF0_THET1
50S ribosomal protein L36
Tax=RBG_13_Chloroflexi_60_13_curated
PLM1_60_coex_sep16_scaffold_2906_19
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8293..8670
DNA (378bp) protein (126aa)
30S ribosomal protein S13 Tax=Caloramator australicus RC3 RepID=I7LGH4_9CLOT
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
PLM1_60_coex_sep16_scaffold_2906_20
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

Not on your lists


8680..9078
DNA (399bp) protein (133aa)
30S ribosomal protein S11 Tax=Paenibacillus sp. JC66 RepID=UPI0002888921
rpsK; 30S ribosomal protein S11
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
PLM1_60_coex_sep16_scaffold_2906_21
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9164..9742
DNA (579bp) protein (193aa)
30S ribosomal protein S4 Tax=Geobacter uraniireducens (strain Rf4) RepID=RS4_GEOUR
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306, ECO:0000313|EMBL:GAM10942.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sp. OR-1.;"
rpsD; 30S ribosomal protein S4
PLM1_60_coex_sep16_scaffold_2906_22
R_Nitrospirae_66_17, Nitrospirae, Bacteria

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9834..10283
DNA (450bp) protein (150aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha Tax=Selenomonas bovis RepID=UPI000378C7C6
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM1_60_coex_sep16_scaffold_2906_23
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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10305..10730
DNA (426bp) protein (142aa)
rpoA; DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha Tax=Nitrospina gracilis 3/211 RepID=M1YXC0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:ETW99462.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
PLM1_60_coex_sep16_scaffold_2906_24
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10762..11133
DNA (372bp) protein (124aa)
50S ribosomal protein L17 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BUQ5_9RHIZ
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
rplQ; 50S ribosomal protein L17
PLM1_60_coex_sep16_scaffold_2906_25
unknown

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comp(11406..11678)
DNA (273bp) protein (91aa)

This feature has no annotations

PLM1_60_coex_sep16_scaffold_2906_26
delta proteobacterium NaphS2, Deltaproteobacteria, Proteobacteria, Bacteria

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11826..13145
DNA (1320bp) protein (440aa)
General secretion pathway protein E family protein Tax=delta proteobacterium NaphS2 RepID=D8EYV9_9DELT
General secretion pathway protein E family protein {ECO:0000313|EMBL:EFK11291.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium NaphS2.;"
type IV pilus assembly protein PilB
Displaying 26 items

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