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PLM1_60_coex_sep16_scaffold_10766

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_coex_sep16_scaffold_10766_1
GWC2_Geobacteraceae_53_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..993)
DNA (993bp) protein (331aa)
anthranilate synthase component I (EC:4.1.3.27)
Anthranilate synthase component I Tax=Geobacter sp. (strain M18) RepID=E8WMC1_GEOS8
Tax=GWC2_Geobacteraceae_53_11_curated
PLM1_60_coex_sep16_scaffold_10766_2
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1104..1841)
DNA (738bp) protein (246aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
tRNA pseudouridine synthase A Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LIV1_SYNFM
tRNA pseudouridine synthase A
PLM1_60_coex_sep16_scaffold_10766_3
unknown

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comp(1829..1972)
DNA (144bp) protein (48aa)

This feature has no annotations

PLM1_60_coex_sep16_scaffold_10766_4
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2000..2896)
DNA (897bp) protein (299aa)
UvrABC system protein A bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
uvrA; excinuclease ABC subunit A
Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
PLM1_60_coex_sep16_scaffold_10766_5
Pelobacter carbinolicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2886..4712)
DNA (1827bp) protein (609aa)
UvrABC system protein A Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A8E2_PELCD
uvrA; excinuclease ABC subunit A
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1).;"
PLM1_60_coex_sep16_scaffold_10766_6
R_WOR_2_68_15, WOR-2, Bacteria

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comp(4911..6539)
DNA (1629bp) protein (543aa)
RNA polymerase sigma factor bin=GWA2_OP3_52_12 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
RNA polymerase sigma-70 factor
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_68_15_curated
PLM1_60_coex_sep16_scaffold_10766_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(6710..7546)
DNA (837bp) protein (279aa)
ccdA; cytochrome c biogenesis protein CcdA bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
ccdA; cytochrome c bio-202sis protein (CcdA)
Tax=CSP1_6_Rokubacteria
PLM1_60_coex_sep16_scaffold_10766_8

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comp(7744..8160)
DNA (417bp) protein (139aa)
Uncharacterized protein (Fragment) Tax=uncultured bacterium RepID=K1YYK8_9BACT
N utilization substance protein B homolog {ECO:0000256|SAAS:SAAS00057003}; Flags: Fragment;; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
NusB antitermination factor
PLM1_60_coex_sep16_scaffold_10766_9
Thermodesulfovibrio yellowstonii, Thermodesulfovibrio, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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comp(8135..8638)
DNA (504bp) protein (168aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:6.3.3.-)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000255|HAMAP-Rule:MF_00178}; Short=DMRL synthase {ECO:0000255|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000255|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000255|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000255|HAMAP-Rule:MF_00178};; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio.;" source="Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 /; YP87).;"
6,7-dimethyl-8-ribityllumazine synthase Tax=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) RepID=RISB_THEYD
PLM1_60_coex_sep16_scaffold_10766_10
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

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comp(8753..9784)
DNA (1032bp) protein (344aa)
Riboflavin biosynthesis protein RibBA Tax=Geobacter metallireducens RepID=Q39V67_GEOMG
ribA; 3,4-dihydroxy-2-butanone-4-phosphate synthase and GTP cyclohydrolase II
Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
Displaying 10 items

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