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PLM1_60_coex_sep16_scaffold_898

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_coex_sep16_scaffold_898_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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2..406
DNA (405bp) protein (135aa)
asd; Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_60_coex_sep16_scaffold_898_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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496..1173
DNA (678bp) protein (226aa)
tRNA pseudouridine synthase A (EC:5.4.99.12)
Pseudouridylate synthase I bin=GWC2_Methylomirabilis_70_16 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_60_coex_sep16_scaffold_898_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1173..1508
DNA (336bp) protein (112aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_60_coex_sep16_scaffold_898_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1630..2208
DNA (579bp) protein (193aa)
formate dehydrogenase subunit alpha (EC:1.7.99.4); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Thermodesulfobacterium geofontis genus=Thermodesulfobacterium taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
formate dehydrogenase subunit alpha (EC:1.7.99.4)
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_60_coex_sep16_scaffold_898_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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2257..4740
DNA (2484bp) protein (828aa)
formate dehydrogenase major subunit; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Nitrate reductase (EC:1.7.99.4)
Tax=CSP1_6_Rokubacteria
PLM1_60_coex_sep16_scaffold_898_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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4743..5522
DNA (780bp) protein (260aa)
4Fe-4S ferredoxin; K00124 formate dehydrogenase, beta subunit bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
4Fe-4S ferredoxin
Tax=CSP1_6_Rokubacteria
PLM1_60_coex_sep16_scaffold_898_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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5515..6333
DNA (819bp) protein (273aa)
Polysulfide reductase NrfD; K04015 protein NrfD bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
Polysulfide reductase NrfD
Tax=CSP1_6_Rokubacteria
PLM1_60_coex_sep16_scaffold_898_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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6413..7162
DNA (750bp) protein (250aa)
Putative formate dehydrogenase family accessory protein (FdhD) bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
formate dehydrogenase family accessory protein (FdhD)
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_60_coex_sep16_scaffold_898_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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7167..8060
DNA (894bp) protein (298aa)
formate dehydrogenase formation protein FdhE, putative; K02380 FdhE protein bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
formate dehydrogenase accessory protein
Tax=CSP1_6_Rokubacteria
PLM1_60_coex_sep16_scaffold_898_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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8057..8863
DNA (807bp) protein (269aa)
Cytochrome c assembly protein bin=GWC2_Methylomirabilis_70_16 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ResC/HemX-like cytochrome c biogenesis membrane protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_60_coex_sep16_scaffold_898_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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8873..10174
DNA (1302bp) protein (434aa)
Glutamyl-tRNA reductase bin=GWF2_Methylomirabilis_70_14 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glutamyl-tRNA reductase
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_60_coex_sep16_scaffold_898_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

10171..11082
DNA (912bp) protein (304aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_60_coex_sep16_scaffold_898_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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11066..11674
DNA (609bp) protein (203aa)
uroporphyrin-III C-methyltransferase (EC:4.2.1.75 2.1.1.107)
Uroporphyrinogen-III C-methyltransferase / uroporphyrinogen-III synthase bin=GWF2_Methylomirabilis_70_14 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
Displaying 13 items

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