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PLM1_60_coex_sep16_scaffold_910

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_coex_sep16_scaffold_910_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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2..280
DNA (279bp) protein (93aa)
Phenylacetic acid degradation-related protein Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q135S5_RHOPS
phenylacetic acid degradation-like protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM1_60_coex_sep16_scaffold_910_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

277..1239
DNA (963bp) protein (321aa)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding bin=GWA2_Methylomirabilis_73_35 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-isomer specific 2-hydroxyacid dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_60_coex_sep16_scaffold_910_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(1223..1612)
DNA (390bp) protein (130aa)
Histidine kinase bin=GWC2_Methylomirabilis_70_16 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
two component sigma54 specific Fis family transcriptional regulator
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_60_coex_sep16_scaffold_910_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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1640..2581
DNA (942bp) protein (314aa)
Threonine dehydratase Tax=Singulisphaera acidiphila RepID=L0DI97_SINAD
threonine dehydratase
Threonine dehydratase {ECO:0000313|EMBL:AGA28538.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM1_60_coex_sep16_scaffold_910_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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2578..2850
DNA (273bp) protein (91aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_60_coex_sep16_scaffold_910_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(2821..4479)
DNA (1659bp) protein (553aa)
AMP-forming acyl-CoA synthetase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
AMP-binding domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM1_60_coex_sep16_scaffold_910_7
Tulasnella calospora, Tulasnella, Cantharellales, Agaricomycetes, Basidiomycota, Fungi

Not on your lists

4533..5132
DNA (600bp) protein (200aa)
Putative uncharacterized protein Tax=Choristoneura fumiferana nuclear polyhedrosis virus RepID=Q7TLR4_NPVCF
Uncharacterized protein {ECO:0000313|EMBL:KIO19273.1}; species="Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Cantharellales; Tulasnellaceae; Tulasnella.;" source="Tulasnella calospora MUT 4182.;"
TonB family protein
PLM1_60_coex_sep16_scaffold_910_8
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5187..5987)
DNA (801bp) protein (267aa)
Methyltransferase type 11 Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PUF1_KRIFD
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ADB29469.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
PLM1_60_coex_sep16_scaffold_910_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6032..6415)
DNA (384bp) protein (128aa)
Histidine kinase bin=GWA2_Methylomirabilis_73_35 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine kinase
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_60_coex_sep16_scaffold_910_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(6417..7622)
DNA (1206bp) protein (402aa)
aminotransferase (EC:2.6.1.-)
Transcriptional regulator with HTH domain and aminotransferase domain bin=GWC2_Methylomirabilis_70_16 species=Thermanaerovibrio velox genus=Thermanaerovibrio taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_60_coex_sep16_scaffold_910_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(7632..8822)
DNA (1191bp) protein (397aa)
L-carnitine dehydratase/bile acid-inducible protein F bin=GWC2_Methylomirabilis_70_16 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
L-carnitine dehydratase/bile acid-inducible protein F
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_60_coex_sep16_scaffold_910_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(8880..9635)
DNA (756bp) protein (252aa)
Beta-lactamase family protein bin=GWC2_Methylomirabilis_70_24 species=Thiomicrospira crunogena genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_60_coex_sep16_scaffold_910_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(9638..10375)
DNA (738bp) protein (246aa)
Iron (Metal) dependent repressor, DtxR family bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
iron dependent repressor
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_60_coex_sep16_scaffold_910_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10445..11608
DNA (1164bp) protein (388aa)
fadE; acyl-CoA dehydrogenase fadE (EC:1.3.99.-)
Acyl-CoA dehydrogenase bin=GWF2_Methylomirabilis_70_14 species=Streptomyces sp. e14 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_60_coex_sep16_scaffold_910_15
unknown

Not on your lists

11613..12035
DNA (423bp) protein (141aa)

This feature has no annotations

PLM1_60_coex_sep16_scaffold_910_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12167..12871)
DNA (705bp) protein (235aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_60_coex_sep16_scaffold_910_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12889..14049)
DNA (1161bp) protein (387aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase protein Tax=Salinisphaera shabanensis E1L3A RepID=U2FTE3_9GAMM
metE1; hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_60_coex_sep16_scaffold_910_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(14079..14972)
DNA (894bp) protein (298aa)
Cobalt-zinc-cadmium resistance protein CzcD bin=GWF2_Methylomirabilis_70_14 species=Mesorhizobium sp. STM 4661 genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
czcD1; cobalt-zinc-cadmium resistance protein CzcD
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_60_coex_sep16_scaffold_910_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(14983..15522)
DNA (540bp) protein (180aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Burkholderia rhizoxinica genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_60_coex_sep16_scaffold_910_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(15519..16346)
DNA (828bp) protein (276aa)
ABC-type transporter, integral membrane subunit bin=GWF2_Methylomirabilis_70_14 species=ACD28 genus=ACD28 taxon_order=ACD28 taxon_class=ACD28 phylum=PER tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_60_coex_sep16_scaffold_910_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(16351..16512)
DNA (162bp) protein (54aa)
ABC transporter related protein bin=GWF2_Methylomirabilis_70_14 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
Tax=GWA2_Rokubacteria_70_23_curated
Displaying 21 items

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