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PLM1_60_coex_sep16_scaffold_1342

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_60_coex_sep16_scaffold_1342_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3..179
DNA (177bp) protein (59aa)
UspA domain-containing protein bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_60_coex_sep16_scaffold_1342_2
Marinithermus hydrothermalis, Marinithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

190..819
DNA (630bp) protein (210aa)
pyridoxine/pyridoxamine 5'-phosphate oxidase (EC:1.4.3.5)
Pyridoxine/pyridoxamine 5'-phosphate oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; EC=1.4.3.5 {ECO:0000256|HAMAP-Rule:MF_01629};; PNP/PMP oxidase {ECO:0000256|HAMAP-Rule:MF_01629}; Pyridoxal 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_01629}; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Marinithermus.;" source="Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1).;"
Pyridoxine/pyridoxamine 5'-phosphate oxidase Tax=Marinithermus hydrothermalis (strain DSM 14884 / JCM 11576 / T1) RepID=F2NKL7_MARHT
PLM1_60_coex_sep16_scaffold_1342_3
unknown

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comp(957..1100)
DNA (144bp) protein (48aa)

This feature has no annotations

PLM1_60_coex_sep16_scaffold_1342_4
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

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comp(1097..2134)
DNA (1038bp) protein (346aa)
ilvC; ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RL58_BLASD
Tax=RBG_16_Chloroflexi_54_18_curated
PLM1_60_coex_sep16_scaffold_1342_5
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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2224..3450
DNA (1227bp) protein (409aa)
Uncharacterized protein Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MSV4_CORCM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFE06246.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
PLM1_60_coex_sep16_scaffold_1342_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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3489..6794
DNA (3306bp) protein (1102aa)
adenylate cyclase (EC:4.6.1.1)
Adenylyl cyclase class-3/4/guanylyl cyclase:Tetratricopeptide TPR_4 bin=GWC2_Methylomirabilis_70_16 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM1_60_coex_sep16_scaffold_1342_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(6795..7166)
DNA (372bp) protein (124aa)
Histidine kinase bin=GWC2_Methylomirabilis_70_16 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
histidine kinase
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_60_coex_sep16_scaffold_1342_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(7189..7638)
DNA (450bp) protein (150aa)
Histidine kinase bin=GWC2_Methylomirabilis_70_16 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
PAS sensor protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_60_coex_sep16_scaffold_1342_9
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7613..8377)
DNA (765bp) protein (255aa)
Micrococcal nuclease-like protein Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=Q67LW6_SYMTH
micrococcal nuclease-like protein
Micrococcal nuclease-like protein {ECO:0000313|EMBL:BAD41330.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium thermophilum (strain T / IAM 14863).;"
PLM1_60_coex_sep16_scaffold_1342_10
unknown

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comp(8377..8625)
DNA (249bp) protein (83aa)
id=3449075 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
PLM1_60_coex_sep16_scaffold_1342_11
R_NC10_66_22, NC10, Bacteria

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comp(8636..9313)
DNA (678bp) protein (226aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI00037CD4AA
cyclase family protein
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM1_60_coex_sep16_scaffold_1342_12
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9375..9758
DNA (384bp) protein (128aa)
Uncharacterized protein Tax=Sphingobium ummariense RL-3 RepID=T0KJ01_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ETX07124.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
ThiJ/PfpI family protein
PLM1_60_coex_sep16_scaffold_1342_13
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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9737..9943
DNA (207bp) protein (69aa)
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain Tax=Xanthomonas perforans 91-118 RepID=F0BXQ7_9XANT
Uncharacterized protein {ECO:0000313|EMBL:ETW96303.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
intracellular protease/amidase
PLM1_60_coex_sep16_scaffold_1342_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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10086..10343
DNA (258bp) protein (86aa)
TonB family protein bin=GWF2_Methylomirabilis_70_14 species=Synechococcus sp. genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TonB family protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_60_coex_sep16_scaffold_1342_15
unknown

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comp(10340..10555)
DNA (216bp) protein (72aa)

This feature has no annotations

Displaying 15 items

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