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PLM4_65_b1_redo_sep16_scaffold_3420

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3420_1
unknown

Not on your lists

2..370
DNA (369bp) protein (123aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3420_2
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

360..1532
DNA (1173bp) protein (391aa)
Uncharacterized protein {ECO:0000313|EMBL:KJK33284.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
PLM4_65_b1_redo_sep16_scaffold_3420_3
unknown

Not on your lists

1566..1961
DNA (396bp) protein (132aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3420_4
unknown

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1924..3429
DNA (1506bp) protein (502aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3420_5
Sphaerobacter thermophilus, Sphaerobacter, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

comp(3664..5031)
DNA (1368bp) protein (456aa)
Amidase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C792_SPHTD
amidase
Amidase {ECO:0000313|EMBL:ACZ39738.1}; species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Sphaerobacter.;" source="Sphaerobacter thermophilus (strain DSM 20745 / S 6022).;"
PLM4_65_b1_redo_sep16_scaffold_3420_6
unknown

Not on your lists

comp(5028..5285)
DNA (258bp) protein (86aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3420_7
Calothrix parietina, Calothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

5286..5969
DNA (684bp) protein (228aa)
Uncharacterized protein Tax=Calothrix sp. PCC 6303 RepID=K9V9L4_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ04107.1}; species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.;" source="Calothrix sp. PCC 6303.;"
PLM4_65_b1_redo_sep16_scaffold_3420_8
RLO_PLX_64_10, Bacteria

Not on your lists

6010..6768
DNA (759bp) protein (253aa)
Uncharacterized protein Tax=Leptospirillum ferriphilum (strain ML-04) RepID=J9ZFY5_LEPFM
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_65_b1_redo_sep16_scaffold_3420_9
Blastopirellula marina, Blastopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

6776..7234
DNA (459bp) protein (153aa)
Uncharacterized protein Tax=Blastopirellula marina DSM 3645 RepID=A4A0J9_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:EAQ77655.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;"
PLM4_65_b1_redo_sep16_scaffold_3420_10
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7360..7890
DNA (531bp) protein (177aa)
Kynurenine formamidase {ECO:0000256|HAMAP-Rule:MF_01969, ECO:0000256|SAAS:SAAS00035513}; Short=KFA {ECO:0000256|HAMAP-Rule:MF_01969};; Short=KFase {ECO:0000256|HAMAP-Rule:MF_01969};; EC=3.5.1.9 {ECO:0000256|HAMAP-Rule:MF_01969, ECO:0000256|SAAS:SAAS00035517};; Arylformamidase {ECO:0000256|HAMAP-Rule:MF_01969}; N-formylkynurenine formamidase {ECO:0000256|HAMAP-Rule:MF_01969}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
hypothetical protein Tax=Curvibacter lanceolatus RepID=UPI00035D5AD3
cyclase family protein
PLM4_65_b1_redo_sep16_scaffold_3420_11
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(7832..9178)
DNA (1347bp) protein (449aa)
glutamate dehydrogenase (EC:1.4.1.3)
Glutamate dehydrogenase Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KZK6_THERP
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_3420_12
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(9212..9826)
DNA (615bp) protein (205aa)
rex; redox-sensing transcriptional repressor rex bin=CNBR_ACIDO species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
CoA-binding protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_3420_13
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(9912..11345)
DNA (1434bp) protein (478aa)
NADH-quinone oxidoreductase subunit N bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
proton-translocating NADH-quinone oxidoreductase, chain N
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_3420_14
GWC2_Elusimicrobia_56_31_curated, Elusimicrobia, Bacteria

Not on your lists

comp(11363..12964)
DNA (1602bp) protein (534aa)
nuoM; NADH-quinone oxidoreductase subunit M (NADH dehydrogenase I, chain M) (NDH-1, chain M) (EC:1.6.99.5 1.6.5.3)
NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M) (NDH-1, chain M) bin=GWA2_Elusimicrobia_56_46 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_56_46 organism_group=Elusimicrobia organism_desc=Good
Tax=GWC2_Elusimicrobia_56_31_curated
PLM4_65_b1_redo_sep16_scaffold_3420_15
candidate division Zixibacteria, Bacteria

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comp(12969..14903)
DNA (1935bp) protein (645aa)
proton-translocating NADH-quinone oxidoreductase subunit L (EC:1.6.99.5); K00341 NADH-quinone oxidoreductase subunit L [EC:1.6.5.3] bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
proton-translocating NADH-quinone oxidoreductase subunit L (EC:1.6.99.5)
Uncharacterized protein {ECO:0000313|EMBL:EQB63481.1}; species="Bacteria.;" source="candidate division Zixibacteria bacterium RBG-1.;"
PLM4_65_b1_redo_sep16_scaffold_3420_16
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14905..15219)
DNA (315bp) protein (105aa)
nuoK; NADH-quinone oxidoreductase subunit K (NADH dehydrogenase I, chain K) (NDH-1, chain K) (EC:1.6.5.3 1.6.99.5)
NADH-quinone oxidoreductase subunit K Tax=Candidatus Methylomirabilis oxyfera RepID=D5MKE4_9BACT
Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
PLM4_65_b1_redo_sep16_scaffold_3420_17
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(15216..15725)
DNA (510bp) protein (170aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA53128.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
NADH-ubiquinone/plastoquinone oxidoreductase chain 6 bin=GWC2_Proteo_65_14_Ab886 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
NADH-ubiquinone/plastoquinone oxidoreductase chain 6
PLM4_65_b1_redo_sep16_scaffold_3420_18
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(15722..16762)
DNA (1041bp) protein (347aa)
NADH-quinone oxidoreductase subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01350};; NADH dehydrogenase I subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; NDH-1 subunit H {ECO:0000256|HAMAP-Rule:MF_01350}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
hypothetical protein Tax=Bacteria RepID=UPI00036C3B06
NADH dehydrogenase subunit H
PLM4_65_b1_redo_sep16_scaffold_3420_19
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(16759..18393)
DNA (1635bp) protein (545aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA53130.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
NADH dehydrogenase I subunit G bin=GWD2_Deltaproteobacteria_55_8 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
NADH dehydrogenase subunit G
PLM4_65_b1_redo_sep16_scaffold_3420_20
RBG_16_Zixibacteria_53_22_curated, Zixibacteria, Bacteria

Not on your lists

comp(18390..19778)
DNA (1389bp) protein (463aa)
NADH-quinone oxidoreductase, F subunit Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SX52_PLAL2
NADH-quinone oxidoreductase subunit F
Tax=RBG_16_Zixibacteria_53_22_curated
PLM4_65_b1_redo_sep16_scaffold_3420_21
RLO_Deltaproteobacteria_40_28, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19775..20284)
DNA (510bp) protein (170aa)
NADH dehydrogenase (Ubiquinone) Tax=Sorangium cellulosum (strain So ce56) RepID=A9EX84_SORC5 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
NADH-quinone oxidoreductase subunit E
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_40_28_curated
PLM4_65_b1_redo_sep16_scaffold_3420_22
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(20281..20634)
DNA (354bp) protein (118aa)
nuoA; NADH-quinone oxidoreductase subunit A (NADH dehydrogenase I, chain A) (NDH-1, chain A) (EC:1.6.99.5 1.6.5.3)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI0003619387
Tax=RBG_13_Acidobacteria_68_16_curated
Displaying 22 items

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