ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_16220

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_16220_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(3..410)
DNA (408bp) protein (136aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein Tax=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) RepID=B8J541_ANAD2
4Fe-4S ferredoxin
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_16220_2
Brachybacterium muris, Brachybacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(413..706)
DNA (294bp) protein (98aa)
hypothetical protein Tax=Brachybacterium muris RepID=UPI000346D0D1
Excisionase {ECO:0000313|EMBL:EYT50717.1}; species="Bacteria; Actinobacteria; Micrococcales; Dermabacteraceae; Brachybacterium.;" source="Brachybacterium muris UCD-AY4.;"
excisionase family DNA binding domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_16220_3
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(1021..1467)
DNA (447bp) protein (149aa)
hypothetical protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_16220_4
unknown

Not on your lists

1688..2365
DNA (678bp) protein (226aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_16220_5
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

2442..3935
DNA (1494bp) protein (498aa)
PAS/PAC sensor hybrid histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-] bin=bin1_lowGC species=Leptospira fainei genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=bin1_lowGC organism_group=Unknown_CP
multi-sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM4_65_b1_redo_sep16_scaffold_16220_6
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

Not on your lists

3896..5317
DNA (1422bp) protein (474aa)
two component sigma54 specific Fis family transcriptional regulator bin=bin1_lowGC species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=bin1_lowGC organism_group=Unknown_CP
acetoacetate metabolism regulatory protein AtoC
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM4_65_b1_redo_sep16_scaffold_16220_7
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

5540..6784
DNA (1245bp) protein (415aa)
Cytochrome c, class I Tax=uncultured Acidobacteria bacterium RepID=G8DPK9_9BACT
class I cytochrome c
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM4_65_b1_redo_sep16_scaffold_16220_8
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

Not on your lists

6781..7293
DNA (513bp) protein (171aa)
Class III cytochrome c domain protein bin=GWF2_Ignavibacteria_35_20 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Ignavibacteria_35_20 organism_group=Ignavibacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM4_65_b1_redo_sep16_scaffold_16220_9
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

7325..7588
DNA (264bp) protein (88aa)
Molybdopterin oxidoreductase bin=GWC2_Syntrophobacterales_56_13 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
molybdopterin oxidoreductase
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
Displaying 9 items

View Taxonomy