ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_753

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_753_1
unknown

Not on your lists

comp(1..60)
DNA (60bp) protein (20aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_753_2
RBG_13_Deltaproteobacteria_52_11b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(207..626)
DNA (420bp) protein (140aa)
Thioesterase superfamily protein Tax=Aminobacterium colombiense (strain DSM 12261 / ALA-1) RepID=D5EGG7_AMICL
thioesterase superfamily protein
Tax=RBG_13_Deltaproteobacteria_52_11b_curated
PLM4_65_b1_redo_sep16_scaffold_753_3
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(623..1111)
DNA (489bp) protein (163aa)
pantetheine-phosphate adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Phosphopantetheine adenylyltransferase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01Q84_SOLUE
PLM4_65_b1_redo_sep16_scaffold_753_4
RBG_16_RIF05_58_8_curated, RIF5, Bacteria

Not on your lists

comp(1111..1923)
DNA (813bp) protein (271aa)
Binding-protein-dependent transport systems inner membrane component bin=GWC2_Deltaproteobacteria_66_88 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_66_88 organism_group=Deltaproteobacteria
binding-protein-dependent transport system inner membrane protein
Tax=RBG_16_RIF05_58_8_curated
PLM4_65_b1_redo_sep16_scaffold_753_5
CSP1_8_Deltaproteobacteria, 43F-1404R, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1920..2939)
DNA (1020bp) protein (340aa)
ABC transporter permease; K02033 peptide/nickel transport system permease protein bin=bin5_DeltaP species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
binding-protein-dependent transporters inner membrane component
Tax=CSP1_8_Deltaproteobacteria
PLM4_65_b1_redo_sep16_scaffold_753_6
Syntrophobacter fumaroxidans, Syntrophobacter, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2891..4585)
DNA (1695bp) protein (565aa)
Extracellular solute-binding protein, family 5 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LI50_SYNFM
extracellular solute-binding protein
Extracellular solute-binding protein, family 5 {ECO:0000313|EMBL:ABK17102.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophobacteraceae; Syntrophobacter.;" source="Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB).;"
PLM4_65_b1_redo_sep16_scaffold_753_7
RBG_13_Aminicenantes_63_10_curated, Aminicenantes, Bacteria

Not on your lists

comp(4623..6797)
DNA (2175bp) protein (725aa)
YD repeat protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01QH4_SOLUE
YD repeat-containing protein
Tax=RBG_13_Aminicenantes_63_10_curated
PLM4_65_b1_redo_sep16_scaffold_753_8
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(6794..8533)
DNA (1740bp) protein (580aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_753_9
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

8752..9501
DNA (750bp) protein (250aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54307.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
MotA/TolQ/ExbB proton channel; K03562 biopolymer transport protein TolQ bin=CNBR_ACIDO species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
protein TolQ
PLM4_65_b1_redo_sep16_scaffold_753_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

9587..10033
DNA (447bp) protein (149aa)
TolR protein bin=GWF2_Methylomirabilis_70_14 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protein TolR
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_65_b1_redo_sep16_scaffold_753_11
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

10041..10790
DNA (750bp) protein (250aa)
Periplasmic protein TonB Tax=uncultured Latescibacteria bacterium RepID=Q2YZV9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KDA54309.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
TonB family transporter protein
PLM4_65_b1_redo_sep16_scaffold_753_12
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

10810..12120
DNA (1311bp) protein (437aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54310.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
biopolymer transport periplasmic beta-propeller repeat protein, TolB-related
Protein TolB bin=GWC2_Geobacteraceae_55_20 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
PLM4_65_b1_redo_sep16_scaffold_753_13
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

12288..12854
DNA (567bp) protein (189aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54242.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
OmpA/MotB protein; K03640 peptidoglycan-associated lipoprotein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
peptidoglycan-associated lipoprotein
PLM4_65_b1_redo_sep16_scaffold_753_14
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

12865..13752
DNA (888bp) protein (296aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54241.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Tol-pal system protein YbgF bin=GWD2_Nitrospirae-related_57_8 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_753_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


13840..14106
DNA (267bp) protein (89aa)
30S ribosomal protein S20 Tax=Planctomyces maris DSM 8797 RepID=A6C3G3_9PLAN
rpsT; 30S ribosomal protein S20
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_b1_redo_sep16_scaffold_753_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(14103..14612)
DNA (510bp) protein (170aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_753_17
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists


comp(14633..17116)
DNA (2484bp) protein (828aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Leucine--tRNA ligase Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R9B3_AMMDK
leucyl-tRNA synthetase
PLM4_65_b1_redo_sep16_scaffold_753_18
unknown

Not on your lists

comp(17138..17884)
DNA (747bp) protein (249aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_753_19
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(17917..18300)
DNA (384bp) protein (128aa)
N utilization substance protein B homolog Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LD81_CHLTF
transcription antitermination factor NusB
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_753_20
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(18341..18838)
DNA (498bp) protein (166aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9).;"
6,7-dimethyl-8-ribityllumazine synthase Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8WZL4_ACISM
6,7-dimethyl-8-ribityllumazine synthase
PLM4_65_b1_redo_sep16_scaffold_753_21
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(18866..19876)
DNA (1011bp) protein (337aa)
adoK; adenosine kinase (EC:2.7.1.20); K00856 adenosine kinase [EC:2.7.1.20] bin=CNBR_ACIDO species=Anaerolinea thermophila genus=Anaerolinea taxon_order=Anaerolineales taxon_class=Anaerolineae phylum=Chloroflexi tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
adoK; adenosine kinase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_753_22
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(19873..20667)
DNA (795bp) protein (265aa)
5'-methylthioadenosine phosphorylase (EC:2.4.2.28) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
methylthioadenosine phosphorylase (EC:2.4.2.28)
Tax=CSP1_5_NC10
PLM4_65_b1_redo_sep16_scaffold_753_23
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(20727..21686)
DNA (960bp) protein (320aa)
dehydrogenase bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
putative dehydrogenase-like protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_753_24
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(21939..22718)
DNA (780bp) protein (260aa)
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase Tax=Holophaga foetida DSM 6591 RepID=H1P371_9BACT
UDP-N-acetylglucosamine acyltransferase
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_753_25
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(22715..23053)
DNA (339bp) protein (113aa)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; Beta-hydroxyacyl-ACP dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ Tax=Candidatus Methylomirabilis oxyfera RepID=D5MG27_9BACT
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase
PLM4_65_b1_redo_sep16_scaffold_753_26
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(23125..24231)
DNA (1107bp) protein (369aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
UDP-3-O-acylglucosamine N-acyltransferase bin=GWB2_Proteobacteria_55_19 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
PLM4_65_b1_redo_sep16_scaffold_753_27
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(24319..24942)
DNA (624bp) protein (208aa)
Outer membrane chaperone Skp (OmpH) Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ATE5_PELPD
Uncharacterized protein {ECO:0000313|EMBL:KDA53665.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
outer membrane chaperone Skp
PLM4_65_b1_redo_sep16_scaffold_753_28
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(25086..27674)
DNA (2589bp) protein (863aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA53615.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
yaeT; outer membrane protein assembly complex protein YaeT
PLM4_65_b1_redo_sep16_scaffold_753_29
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(27810..30239)
DNA (2430bp) protein (810aa)
ATPase AAA-2 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IKM6_KORVE
ATPase AAA
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_753_30
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

comp(30294..30983)
DNA (690bp) protein (230aa)
Lipoprotein-releasing system ATP-binding protein LolD {ECO:0000256|HAMAP-Rule:MF_01708}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01708};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum.;"
antimicrobial peptide ABC transporter ATPase (EC:3.6.3.-)
Lipoprotein-releasing system ATP-binding protein LolD Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJE0_9BACT
Displaying items 1-30 of 43 in total

View Taxonomy