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PLM4_65_b1_redo_sep16_scaffold_1503

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1503_1
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(3..1220)
DNA (1218bp) protein (406aa)
Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Fis family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_1503_2
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(1337..2854)
DNA (1518bp) protein (506aa)
protease Do (EC:3.4.21.108)
Protease Do Tax=Desulfovibrio sp. X2 RepID=S7V737_9DELT
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1503_3
CG_Deferri_01, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

Not on your lists

comp(3004..3447)
DNA (444bp) protein (148aa)
CoA-binding protein Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YWR0_9RHOO
CoA binding domain protein
Tax=CG_Deferri_01
PLM4_65_b1_redo_sep16_scaffold_1503_4
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(3444..4424)
DNA (981bp) protein (327aa)
Gll3406 protein Tax=Fusobacterium sp. CAG:815 RepID=R7LU98_9FUSO
Uncharacterized protein {ECO:0000313|EMBL:KDA54687.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1503_5
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4609..5124
DNA (516bp) protein (172aa)
ribosome maturation protein RimP Tax=Arenimonas oryziterrae RepID=UPI0003B62819
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1503_6
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

5146..6645
DNA (1500bp) protein (500aa)
NusA antitermination factor Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIT2_KORVE
NusA antitermination factor
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1503_7
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

6655..9489
DNA (2835bp) protein (945aa)
Translation initiation factor IF-2 Tax=Geobacter sp. (strain M21) RepID=IF2_GEOSM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
infB; translation initiation factor IF-2
PLM4_65_b1_redo_sep16_scaffold_1503_8
Hydrogenivirga sp. 128-5-R1-1, Hydrogenivirga, Aquificales, Aquificae, Aquificae, Bacteria

Not on your lists

9578..9865
DNA (288bp) protein (96aa)
Uncharacterized protein Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UZD1_9AQUI
Uncharacterized protein {ECO:0000313|EMBL:EDP74302.1}; species="Bacteria; Aquificae; Aquificales; Aquificaceae; Hydrogenivirga.;" source="Hydrogenivirga sp. 128-5-R1-1.;"
YlxP
PLM4_65_b1_redo_sep16_scaffold_1503_9
Exiguobacterium sp. RIT341, Exiguobacterium, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9882..10247
DNA (366bp) protein (122aa)
Ribosome-binding factor A Tax=Thauera sp. 63 RepID=N6Y3Z1_9RHOO
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillales Family XII. Incertae Sedis; Exiguobacterium.;" source="Exiguobacterium sp. RIT341.;"
rbfA; ribosome-binding factor A
PLM4_65_b1_redo_sep16_scaffold_1503_10
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

10244..11173
DNA (930bp) protein (310aa)
tRNA pseudouridine synthase B (EC:4.2.1.70)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000376E5E8
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1503_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists


11297..11572
DNA (276bp) protein (92aa)
30S ribosomal protein S15 Tax=Cystobacter fuscus DSM 2262 RepID=S9PIF5_9DELT
30S ribosomal protein S15
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1503_12
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

11685..13886
DNA (2202bp) protein (734aa)
polynucleotide phosphorylase/polyadenylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
polyribonucleotide nucleotidyltransferase (EC:2.7.7.8)
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1503_13
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(13950..14321)
DNA (372bp) protein (124aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8P8J3_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM4_65_b1_redo_sep16_scaffold_1503_14
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14318..15061)
DNA (744bp) protein (248aa)
Hydrolase, TatD family Tax=Alicyclobacillus acidocaldarius (strain Tc-4-1) RepID=F8IIZ6_ALIAT
tatD; TatD family hydrolase
Hydrolase, TatD family {ECO:0000313|EMBL:AEJ42147.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldarius (strain Tc-4-1) (Bacillus; acidocaldarius).;"
PLM4_65_b1_redo_sep16_scaffold_1503_15
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists


comp(15100..17037)
DNA (1938bp) protein (646aa)
Methionine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424}; EC=6.1.1.10 {ECO:0000256|HAMAP-Rule:MF_01228, ECO:0000256|SAAS:SAAS00252424};; Methionyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01228}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
metG; methionyl-tRNA synthetase (EC:6.1.1.10)
Putative tRNA binding domain protein Tax=uncultured marine microorganism HF4000_ANIW137I15 RepID=B3T4L7_9ZZZZ
PLM4_65_b1_redo_sep16_scaffold_1503_16
Bacillus boroniphilus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(17083..17772)
DNA (690bp) protein (230aa)
Uncharacterized protein Tax=Bacillus sp. 17376 RepID=V6SX99_9BACI
DNA repair protein RadC {ECO:0000313|EMBL:GAE43957.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus boroniphilus JCM 21738.;"
radC; DNA repair protein RadC
PLM4_65_b1_redo_sep16_scaffold_1503_17
Desulfobulbus sp. Tol-SR, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17800..18009
DNA (210bp) protein (70aa)
hypothetical protein Tax=Brevibacillus sp. phR RepID=UPI0002F3D6D5
Uncharacterized protein {ECO:0000313|EMBL:KGO35195.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus sp. Tol-SR.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_1503_18
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(17951..19111)
DNA (1161bp) protein (387aa)
Glycosyl transferase, group 1 bin=GWF2_Methylomirabilis_70_14 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1503_19
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(19113..20168)
DNA (1056bp) protein (352aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA53495.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Alcohol dehydrogenase zinc-binding domain protein bin=GWC2_Proteo_65_14_Ab886 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
Zn-dependent oxidoreductase, NADPH:quinone reductase
PLM4_65_b1_redo_sep16_scaffold_1503_20
unknown

Not on your lists

comp(20173..21771)
DNA (1599bp) protein (533aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_1503_21
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(21768..22493)
DNA (726bp) protein (242aa)
Polyprenyl synthetase Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CL48_DESK7
polyprenyl synthetase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1503_22
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(22688..23029)
DNA (342bp) protein (114aa)
Anti-sigma factor antagonist Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08ZD6_STIAD
anti-sigma-factor antagonist
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1503_23
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(23026..23451)
DNA (426bp) protein (142aa)
anti-sigma regulatory factor (EC:2.7.11.1) bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1503_24
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

23568..24842
DNA (1275bp) protein (425aa)
Putative uncharacterized protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIV6_CHLTF
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1503_25
CG_Micra_03, Micraarchaeota, Archaea

Not on your lists

comp(24856..25647)
DNA (792bp) protein (264aa)
CAAX protease self-immunity
CAAX protease self-immunity bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Tax=CG_Micra_03
Displaying 25 items

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