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PLM4_65_b1_redo_sep16_scaffold_6814

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_6814_1
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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2..142
DNA (141bp) protein (47aa)
two component, sigma54 specific, Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX bin=CNBR_ACIDO species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
sigma-54 factor interaction domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_6814_2
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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278..793
DNA (516bp) protein (172aa)
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
hypothetical protein Tax=Desulfurispora thermophila RepID=UPI0003641B21
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_6814_3
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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804..1382
DNA (579bp) protein (193aa)
hypothetical protein; K06966 bin=bin7_NC10_sister species=Meiothermus silvanus genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10
Conserved hypothetical protein CHP00730
Tax=CSP1_6_Rokubacteria
PLM4_65_b1_redo_sep16_scaffold_6814_4
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(1429..2388)
DNA (960bp) protein (320aa)
Glycosyl transferase family 2 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DKH6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KDA53226.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
glycosyl transferase
PLM4_65_b1_redo_sep16_scaffold_6814_5
Bacteroides sp. CAG:661, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2399..4612)
DNA (2214bp) protein (738aa)
Uncharacterized protein Tax=Bacteroides sp. CAG:661 RepID=R5SQC5_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ48941.1}; species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:661.;"
PLM4_65_b1_redo_sep16_scaffold_6814_6
BJP_IG2158_Actinobacteria_57_21, Bacteria

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comp(4822..5745)
DNA (924bp) protein (308aa)
Uncharacterized protein Tax=Microcystis aeruginosa PCC 9701 RepID=I4IQX9_MICAE
hypothetical protein
Tax=BJP_IG2158_Actinobacteria_57_21
PLM4_65_b1_redo_sep16_scaffold_6814_trna_1
unknown

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6003..6074
DNA (72bp)
transferRNA Val
PLM4_65_b1_redo_sep16_scaffold_6814_trna_2
unknown

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6092..6164
DNA (73bp)
transferRNA Val
PLM4_65_b1_redo_sep16_scaffold_6814_7
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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6252..8204
DNA (1953bp) protein (651aa)
Ser-tRNA(Thr) hydrolase; threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3)
Threonine--tRNA ligase Tax=Holophaga foetida DSM 6591 RepID=H1P5R9_9BACT
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
PLM4_65_b1_redo_sep16_scaffold_6814_8
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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8290..8733
DNA (444bp) protein (148aa)
translation initiation factor IF-3 Tax=Legionella shakespearei RepID=UPI000367B0D9
infC; Translation initiation factor IF-3
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM4_65_b1_redo_sep16_scaffold_6814_9

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8747..8944
DNA (198bp) protein (66aa)
50S ribosomal protein L35 Tax=uncultured candidate division JS1 bacterium RepID=G3BMT2_9BACT
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; species="Bacteria; candidate division JS1; environmental samples.;" source="uncultured candidate division JS1 bacterium.;"
rpmI; 50S ribosomal protein L35
PLM4_65_b1_redo_sep16_scaffold_6814_10
Geobacillus sp. CAMR5420, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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9044..9406
DNA (363bp) protein (121aa)
50S ribosomal protein L20 Tax=Geobacillus RepID=RL20_GEOKA
ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. CAMR5420.;"
PLM4_65_b1_redo_sep16_scaffold_6814_11
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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9403..10479
DNA (1077bp) protein (359aa)
Phenylalanine--tRNA ligase alpha subunit Tax=Caldithrix abyssi DSM 13497 RepID=H1XPD0_9BACT
phenylalanyl-tRNA synthetase subunit alpha
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_6814_12
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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10476..12479
DNA (2004bp) protein (668aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Phenylalanine--tRNA ligase beta subunit Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MFB7_CORCM
pheT; phenylalanyl-tRNA synthetase subunit beta
Displaying 14 items

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