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PLM4_65_b1_redo_sep16_scaffold_14442

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_14442_1
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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2..1186
-----------------
DNA (1185bp)
protein (395aa)
Peptidase M24 Tax=Candidatus Nitrospira defluvii RepID=D8P9X6_9BACT
peptidase M24
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM4_65_b1_redo_sep16_scaffold_14442_2
unknown

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1186..2136
-----------------
DNA (951bp)
protein (317aa)

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PLM4_65_b1_redo_sep16_scaffold_14442_3
unknown

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2200..2811
-----------------
DNA (612bp)
protein (204aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_14442_4
Coraliomargarita akajimensis, Coraliomargarita, Puniceicoccales, Opitutae, Verrucomicrobia, Bacteria

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comp(2893..3555)
-----------------
DNA (663bp)
protein (221aa)
DtxR family iron (metal) dependent repressor; K03709 DtxR family transcriptional regulator, Mn-dependent transcriptional regulator bin=CNBR_ACIDO species=Coraliomargarita akajimensis genus=Coraliomargarita taxon_order=Puniceicoccales taxon_class=Opitutae phylum=Verrucomicrobia tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
DtxR family iron (metal) dependent repressor
Iron (Metal) dependent repressor, DtxR family {ECO:0000313|EMBL:ADE53265.1}; species="Bacteria; Verrucomicrobia; Opitutae; Puniceicoccales; Puniceicoccaceae; Coraliomargarita.;" source="Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193; / KCTC 12865).;"
PLM4_65_b1_redo_sep16_scaffold_14442_5
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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3675..4823
-----------------
DNA (1149bp)
protein (383aa)
Putative Multidrug efflux transporter, membrane fusion protein Tax=Candidatus Nitrospira defluvii PF75_9BACT">RepID=D8PF75_9BACT bin=16ft_combo_ws3_JS1 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative multidrug efflux transporter membrane fusion protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_14442_6
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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4820..7930
-----------------
DNA (3111bp)
protein (1037aa)
AcrB/AcrD/AcrF family protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Methylococcus capsulatus genus=Methylococcus taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
acriflavin resistance protein
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 6 items

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