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PLM4_65_b1_redo_sep16_scaffold_3441

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3441_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2..316
-----------------
DNA (315bp)
protein (105aa)
50S ribosomal protein L25 Tax=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) RepID=RL25_HALOH bin=16ft_combo_ws3_JS1 species=Halothermothrix orenii genus=Halothermothrix taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
50S ribosomal protein L25
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_3441_2
RIFOXYA2_FULL_Elusimicrobia_69_6_curated, Elusimicrobia, Bacteria

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424..945
-----------------
DNA (522bp)
protein (174aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C318_SPHTD
Tax=RIFOXYA2_FULL_Elusimicrobia_69_6_curated
PLM4_65_b1_redo_sep16_scaffold_3441_3
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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1062..1592
-----------------
DNA (531bp)
protein (177aa)
30S ribosomal protein S6 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C326_DESTA
SSU ribosomal protein S6P
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1).;"
PLM4_65_b1_redo_sep16_scaffold_3441_4
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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1595..1885
-----------------
DNA (291bp)
protein (97aa)
rpsR; 30S ribosomal protein S18; K02963 small subunit ribosomal protein S18 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
rpsR; 30S ribosomal protein S18
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_3441_5
BJP_08E140C01_Desulfomicrobium_58_14, Desulfomicrobium, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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1895..2341
-----------------
DNA (447bp)
protein (149aa)
50S ribosomal protein L9 Tax=Desulfomicrobium baculatum (strain DSM 4028 / VKM B-1378) RepID=C7LWN6_DESBD
50S ribosomal protein L9
Tax=BJP_08E140C01_Desulfomicrobium_58_14
PLM4_65_b1_redo_sep16_scaffold_3441_6
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

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2346..3551
-----------------
DNA (1206bp)
protein (402aa)
metW; Methionine biosynthesis protein MetW bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
PLM4_65_b1_redo_sep16_scaffold_3441_7
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(3569..4537)
-----------------
DNA (969bp)
protein (323aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54794.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Multimodular transpeptidase-transglycosylase bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
penicillin-binding protein
PLM4_65_b1_redo_sep16_scaffold_3441_8
unknown

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5770..6426
-----------------
DNA (657bp)
protein (219aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3441_9
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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6423..8414
-----------------
DNA (1992bp)
protein (664aa)
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
uvrB; excinuclease ABC subunit B; K03702 excinuclease ABC subunit B bin=CNBR_ACIDO species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
uvrB; UvrABC system protein B (Protein uvrB) (Excinuclease ABC subunit B)
PLM4_65_b1_redo_sep16_scaffold_3441_10
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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8414..10219
-----------------
DNA (1806bp)
protein (602aa)
UvrABC system protein C Tax=Solibacter usitatus (strain Ellin6076) RepID=UVRC_SOLUE
uvrC; excinuclease ABC subunit C
UvrABC system protein C {ECO:0000255|HAMAP-Rule:MF_00203}; Short=Protein UvrC {ECO:0000255|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000255|HAMAP-Rule:MF_00203}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM4_65_b1_redo_sep16_scaffold_3441_11
CG_Nitrosp_01, Nitrospirae, Bacteria

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10232..11737
-----------------
DNA (1506bp)
protein (502aa)
Putative uncharacterized protein bin=GWA1_Deltaproteobacteria_52_35 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA1_Deltaproteobacteria_52_35 organism_group=Deltaproteobacteria organism_desc=Good + Candidate for further analysis!
Tax=CG_Nitrosp_01
PLM4_65_b1_redo_sep16_scaffold_3441_12
RBG_16_Deltaproteobacteria_64_85_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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12162..13052
-----------------
DNA (891bp)
protein (297aa)
Muramoyltetrapeptide carboxypeptidase bin=GWC2_Proteo_65_14_Ab886 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
peptidase U61 LD-carboxypeptidase A
Tax=RBG_16_Deltaproteobacteria_64_85_curated
PLM4_65_b1_redo_sep16_scaffold_3441_13
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

13074..13874
-----------------
DNA (801bp)
protein (267aa)
Cyclic nucleotide-binding protein Tax=Holophaga foetida DSM 6591 RepID=H1P433_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KDA53550.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
cyclic nucleotide-binding domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_3441_14
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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14038..16263
-----------------
DNA (2226bp)
protein (742aa)
ATP-dependent DNA helicase RecG; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] bin=RBG_19FT_COMBO_GAL15_69_19 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG_19FT_COMBO_GAL15_69_19 organism_group=GAL15 organism_desc=Curation Candidate
recG; ATP-dependent DNA helicase RecG
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_3441_15
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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16276..17424
-----------------
DNA (1149bp)
protein (383aa)
Glycosyltransferase Tax=Sorangium cellulosum (strain So ce56) RepID=A9G8Z2_SORC5 bin=16ft_combo_ws3_JS1 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
group 1 glycosyl transferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_3441_16
unknown

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17421..17945
-----------------
DNA (525bp)
protein (175aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3441_17
R_Acidobacteria_59_13, Acidobacteria, Bacteria

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18056..19075
-----------------
DNA (1020bp)
protein (340aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] bin=bin1_lowGC species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin1_lowGC organism_group=Unknown_CP
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
PLM4_65_b1_redo_sep16_scaffold_3441_18
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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19072..19863
-----------------
DNA (792bp)
protein (264aa)
scpA; segregation and condensation protein A; K05896 segregation and condensation protein A bin=GWC2_NOV_55_46 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_NOV_55_46 organism_group=Proteobacteria
scpA; segregation and condensation protein A
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_3441_19
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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19860..20486
-----------------
DNA (627bp)
protein (209aa)
scpB; segregation and condensation protein B; K06024 segregation and condensation protein B bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
scpB; segregation and condensation protein B
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3441_20
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

20483..21397
-----------------
DNA (915bp)
protein (305aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
ribosomal large subunit pseudouridine synthase B; K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
pseudouridine synthase family (EC:5.4.99.12)
PLM4_65_b1_redo_sep16_scaffold_3441_21
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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21394..21594
-----------------
DNA (201bp)
protein (67aa)
(d)CMP kinase {ECO:0000256|SAAS:SAAS00249031}; EC=2.7.4.25 {ECO:0000256|SAAS:SAAS00249031};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldarius (strain Tc-4-1) (Bacillus; acidocaldarius).;"
Cytidylate kinase Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WX95_ALIAD
cmk; cytidylate kinase
Displaying 21 items

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