ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_3588

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3588_1
unknown

Not on your lists

1..117
-----------------
DNA (117bp)
protein (39aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3588_2
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

114..1163
-----------------
DNA (1050bp)
protein (350aa)
leucine dehydrogenase (EC:1.4.1.9)
Leucine dehydrogenase {ECO:0000313|EMBL:ACI99173.1}; EC=1.4.1.9 {ECO:0000313|EMBL:ACI99173.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
Leucine dehydrogenase Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6ITF5_RHOCS
PLM4_65_b1_redo_sep16_scaffold_3588_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

1160..2929
-----------------
DNA (1770bp)
protein (590aa)
Aminodeoxychorismate synthase, component I {ECO:0000313|EMBL:CDM64500.1}; EC=2.6.1.85 {ECO:0000313|EMBL:CDM64500.1};; EC=4.1.3.38 {ECO:0000313|EMBL:CDM64500.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Para-aminobenzoate synthase, subunit I Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HAT7_ANADF
para-aminobenzoate synthase subunit I
PLM4_65_b1_redo_sep16_scaffold_3588_4
GWC2_ACD39_50_8_curated, ACD39, Bacteria

Not on your lists

comp(2916..3473)
-----------------
DNA (558bp)
protein (186aa)
hypothetical protein Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00037B812B
metal dependent phosphohydrolase
Tax=GWC2_ACD39_50_8_curated
PLM4_65_b1_redo_sep16_scaffold_3588_5
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(3485..3802)
-----------------
DNA (318bp)
protein (106aa)
Caa(3)-type oxidase, subunit IV Tax=Acidobacterium sp. (strain MP5ACTX9) RepID=E8X4X6_ACISM
caa(3)-type oxidase subunit IV
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_3588_6
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(3806..4468)
-----------------
DNA (663bp)
protein (221aa)
cytochrome c oxidase subunit III; K02276 cytochrome c oxidase subunit III [EC:1.9.3.1] bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cytochrome c oxidase subunit III
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_3588_7
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(4498..6147)
-----------------
DNA (1650bp)
protein (550aa)
Cytochrome-c oxidase {ECO:0000313|EMBL:ABF41996.1}; EC=1.9.3.1 {ECO:0000313|EMBL:ABF41996.1};; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
Cytochrome-c oxidase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IMA4_KORVE
cytochrome-c oxidase
PLM4_65_b1_redo_sep16_scaffold_3588_8
RBG_16_Acidobacteria_68_9_curated, Acidobacteria, Bacteria

Not on your lists

comp(6144..7124)
-----------------
DNA (981bp)
protein (327aa)
Cytochrome c oxidase subunit 2 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02BQ9_SOLUE
cytochrome c oxidase subunit II
Tax=RBG_16_Acidobacteria_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_3588_9
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(7121..8017)
-----------------
DNA (897bp)
protein (299aa)
Uncharacterized protein SCO1/SenC/PrrC Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKF1_CHLTF
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_3588_10
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8038..8535)
-----------------
DNA (498bp)
protein (166aa)
hypothetical protein Tax=Methylobacterium sp. MB200 RepID=UPI000344A6EC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCD98327.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
PLM4_65_b1_redo_sep16_scaffold_3588_11
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(8528..9733)
-----------------
DNA (1206bp)
protein (402aa)
Putative uncharacterized protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LKF3_CHLTF
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_3588_12
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(9730..10386)
-----------------
DNA (657bp)
protein (219aa)
Quinol:cytochrome c oxidoreductase monoheme cytochrome subunit Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IM99_KORVE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_3588_13
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(10373..10942)
-----------------
DNA (570bp)
protein (190aa)
Transmembrane prediction Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CCI4_THET1
transmembrane prediction
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_3588_14
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(10939..12342)
-----------------
DNA (1404bp)
protein (468aa)
polysulphide reductase, NrfD; K00185 molybdopterin oxidoreductase, membrane subunit [EC:1.2.7.-] bin=CNBR_ACIDO species=Schlesneria paludicola genus=Schlesneria taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
polysulfide reductase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_3588_15
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(12339..15476)
-----------------
DNA (3138bp)
protein (1046aa)
4Fe-4S ferredoxin, iron-sulfur binding domain protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02BR6_SOLUE
4Fe-4S ferredoxin
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM4_65_b1_redo_sep16_scaffold_3588_16
Thermobaculum terrenum, Thermobaculum, Bacteria

Not on your lists

comp(15486..16136)
-----------------
DNA (651bp)
protein (217aa)
Chaperone protein HtpG Tax=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) RepID=D1CCI7_THET1
chaperone protein HtpG
Chaperone protein HtpG {ECO:0000313|EMBL:ACZ42502.1}; Flags: Precursor;; species="Bacteria; Thermobaculum.;" source="Thermobaculum terrenum (strain ATCC BAA-798 / YNP1).;"
PLM4_65_b1_redo_sep16_scaffold_3588_17
Truepera radiovictrix, Truepera, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

16391..16696
-----------------
DNA (306bp)
protein (102aa)
Putative esterase Tax=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) RepID=D7CUK8_TRURR
putative esterase
Putative esterase {ECO:0000313|EMBL:ADI15793.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Trueperaceae; Truepera.;" source="Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 /; RQ-24).;"
Displaying 17 items

View Taxonomy