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PLM4_65_b1_redo_sep16_scaffold_3752

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_3752_1
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(3..593)
-----------------
DNA (591bp)
protein (197aa)
Response regulator bin=GWA2_Ignavibacteria_55_11 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
pyruvate phosphate dikinase PEP/pyruvate-binding protein
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_3752_2
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(603..1886)
-----------------
DNA (1284bp)
protein (428aa)
Glutamate dehydrogenase bin=GWF2_Melioribacter_38_21 species=Melioribacter roseus genus=Melioribacter taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
glutamate dehydrogenase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_3752_3
unknown

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comp(2140..2445)
-----------------
DNA (306bp)
protein (102aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3752_4
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(2442..3359)
-----------------
DNA (918bp)
protein (306aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Pseudouridine synthase, RluA family Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D6L9_SINAD
RluA family pseudouridine synthase
PLM4_65_b1_redo_sep16_scaffold_3752_5
RIFOXYB2_FULL_Elusimicrobia_62_6_curated, Elusimicrobia, Bacteria

Not on your lists

comp(3391..3885)
-----------------
DNA (495bp)
protein (165aa)
Asparaginase/glutaminase bin=GWA2_Elusi_like_61_42 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Elusi_like_61_42 organism_group=Elusimicrobia organism_desc=Possibly not Elusi
asparaginase
Tax=RIFOXYB2_FULL_Elusimicrobia_62_6_curated
PLM4_65_b1_redo_sep16_scaffold_3752_6
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(3882..4421)
-----------------
DNA (540bp)
protein (180aa)
hypothetical protein Tax=Calothrix sp. PCC 7103 RepID=UPI00031ECDD1
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_3752_7
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

comp(4409..4714)
-----------------
DNA (306bp)
protein (102aa)
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_3752_8
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(4725..5519)
-----------------
DNA (795bp)
protein (265aa)
Dimethylargininase Tax=Rhodanobacter spathiphylli B39 RepID=I4W486_9GAMM
amidinotransferase
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_3752_9
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5588..8023)
-----------------
DNA (2436bp)
protein (812aa)
TonB-denpendent receptor Tax=Spongiibacter tropicus RepID=UPI0003B5335C
TonB-dependent receptor
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_3752_10
unknown

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comp(8184..8396)
-----------------
DNA (213bp)
protein (71aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3752_11
unknown

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comp(8530..8985)
-----------------
DNA (456bp)
protein (152aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_3752_12
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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9095..10996
-----------------
DNA (1902bp)
protein (634aa)
Putative uncharacterized protein Tax=Variovorax paradoxus (strain S110) RepID=C5CX31_VARPS
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM4_65_b1_redo_sep16_scaffold_3752_13
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11051..12208
-----------------
DNA (1158bp)
protein (386aa)
Uncharacterized protein Tax=Micromonospora sp. (strain L5) RepID=E8RWI6_MICSL
Putative virion core protein (Lumpy skin disease virus) {ECO:0000313|EMBL:EXG81280.1}; species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3752_14
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

12235..13359
-----------------
DNA (1125bp)
protein (375aa)
hypothetical protein Tax=Verrucomicrobium spinosum RepID=UPI000174535B
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_3752_15
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13370..15280)
-----------------
DNA (1911bp)
protein (637aa)
hypothetical protein Tax=Methylosinus sp. LW4 RepID=UPI000373EB3E
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44743.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_3752_16
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(15452..15919)
-----------------
DNA (468bp)
protein (156aa)
Putative uncharacterized protein Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SQC1_HAHCH
hypothetical protein
Tax=CG_Arma_01
PLM4_65_b1_redo_sep16_scaffold_3752_17
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(15938..16270)
-----------------
DNA (333bp)
protein (111aa)
Cysteine synthase bin=GWF2_Melioribacter_38_21 species=Micromonospora sp. ATCC 39149 genus=Micromonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Melioribacter_38_21 organism_group=Ignavibacteria
cysteine synthase
Tax=RBG_13_Acidobacteria_68_16_curated
Displaying 17 items

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