ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_18994

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_18994_1
unknown

Not on your lists

1..327
-----------------
DNA (327bp)
protein (109aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_18994_2
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(465..1433)
-----------------
DNA (969bp)
protein (323aa)
rluD; pseudouridine synthase (pseudouridines 1911, 1915, 1917 in 23S RNA) (EC:4.2.1.70)
Pseudouridine synthase Tax=Candidatus Methylomirabilis oxyfera RepID=D5MN69_9BACT
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_18994_3
delta proteobacterium MLMS-1, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1430..1948)
-----------------
DNA (519bp)
protein (173aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium MLMS-1.;"
Lipoprotein signal peptidase Tax=delta proteobacterium MLMS-1 RepID=Q1NLQ6_9DELT
lipoprotein signal peptidase
PLM4_65_b1_redo_sep16_scaffold_18994_4
Desulfovibrio magneticus, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1945..2334)
-----------------
DNA (390bp)
protein (130aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000255|HAMAP-Rule:MF_00101}; Short=Holo-ACP synthase {ECO:0000255|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000255|HAMAP-Rule:MF_00101};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000255|HAMAP-Rule:MF_00101}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1).;"
Holo-[acyl-carrier-protein] synthase Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=ACPS_DESMR
acpS; 4'-phosphopantetheinyl transferase
PLM4_65_b1_redo_sep16_scaffold_18994_5
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(2331..2948)
-----------------
DNA (618bp)
protein (206aa)
thiE; thiamine-phosphate pyrophosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2).;"
Thiamine-phosphate synthase Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KY58_THERP
PLM4_65_b1_redo_sep16_scaffold_18994_6
unknown

Not on your lists

comp(2917..3195)
-----------------
DNA (279bp)
protein (93aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_18994_7
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(3250..5604)
-----------------
DNA (2355bp)
protein (785aa)
FecR domain protein bin=bin5_DeltaP species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_18994_8
Cyanobium gracile, Cyanobium, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

5766..6653
-----------------
DNA (888bp)
protein (296aa)
Small-conductance mechanosensitive channel Tax=Cyanobium gracile (strain ATCC 27147 / PCC 6307) RepID=K9PB84_CYAGP
small-conductance mechanosensitive channel
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:AFY29824.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanobium.;" source="Cyanobium gracile (strain ATCC 27147 / PCC 6307).;"
PLM4_65_b1_redo_sep16_scaffold_18994_9
Desulfobulbus sp. Tol-SR, Desulfobulbus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6650..6973
-----------------
DNA (324bp)
protein (108aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfobulbus.;" source="Desulfobulbus sp. Tol-SR.;"
peptide deformylase (EC:3.5.1.88)
peptide deformylase Tax=Thioalkalivibrio RepID=UPI00036E77F0
Displaying 9 items

View Taxonomy