ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_15097

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_15097_1
unknown

Not on your lists

3..155
-----------------
DNA (153bp)
protein (51aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_15097_2
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(164..1651)
-----------------
DNA (1488bp)
protein (496aa)
trimethylamine methyltransferase; K14083 trimethylamine methyltransferase [EC:2.1.1.-] bin=RBG_16_Aminicenantes_63_16_plus species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_16_plus organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate Resolve three similar GC_Cov Aminicentantes bins with ESOM
trimethylamine methyltransferase
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_15097_3
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(1648..2358)
-----------------
DNA (711bp)
protein (237aa)
Vitamin B12 dependent methionine synthase, activation domain protein bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Vitamin B12 dependent methionine synthase activation region
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_15097_4
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(2355..3254)
-----------------
DNA (900bp)
protein (300aa)
methionine synthase I, cobalamin-binding domain-containing protein; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
homocysteine S-methyltransferase
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_15097_5
RBG_16_Aminicenantes_66_30_curated, Aminicenantes, Bacteria

Not on your lists

comp(3251..3931)
-----------------
DNA (681bp)
protein (227aa)
methyltransferase cognate corrinoid protein; K14084 trimethylamine corrinoid protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
mttC6; corrinoid protein MttC6
Tax=RBG_16_Aminicenantes_66_30_curated
PLM4_65_b1_redo_sep16_scaffold_15097_6
R_Deltaproteobacteria_47_10, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3992..5989)
-----------------
DNA (1998bp)
protein (666aa)
Response regulator receiver modulated metal dependent phosphohydrolase Tax=uncultured bacterium RepID=K1ZCS7_9BACT
response regulator
Tax=RIFCSPLOWO2_02_FULL_Deltaproteobacteria_47_10_curated
PLM4_65_b1_redo_sep16_scaffold_15097_7
Brevibacillus sp. CF112, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

6174..6716
-----------------
DNA (543bp)
protein (181aa)
Uncharacterized protein Tax=Brevibacillus RepID=J2HAZ2_9BACL
Uncharacterized protein {ECO:0000313|EMBL:EJL40105.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus sp. CF112.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_15097_8
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(6742..7236)
-----------------
DNA (495bp)
protein (165aa)
purE; phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
N5-carboxyaminoimidazole ribonucleotide mutase Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1FAF7_ACIC5
PLM4_65_b1_redo_sep16_scaffold_15097_9
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7233..7889)
-----------------
DNA (657bp)
protein (219aa)
murF; UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136, ECO:0000313|EMBL:CAN97584.1};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase Tax=Sorangium cellulosum (strain So ce56) RepID=A9EYX9_SORC5
Displaying 9 items

View Taxonomy