ggKbase home page

PLM4_65_b1_redo_sep16_scaffold_34341

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_34341_1
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..375
-----------------
DNA (375bp)
protein (125aa)
Glycosyl transferase group 1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BWJ3_NITHN
group 1 glycosyl transferase
Glycosyl transferase group 1 {ECO:0000313|EMBL:ADE15650.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
PLM4_65_b1_redo_sep16_scaffold_34341_2
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

comp(303..1523)
-----------------
DNA (1221bp)
protein (407aa)
hypothetical protein Tax=Candidatus Omnitrophus fodinae SCGC AAA011-A17 RepID=UPI0003B4966C
aldo/keto reductase
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM4_65_b1_redo_sep16_scaffold_34341_3
Halomonas sp. A3H3, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1520..1984)
-----------------
DNA (465bp)
protein (155aa)
Uncharacterized protein Tax=Halomonas sp. A3H3 RepID=T2L526_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:CDG52029.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas sp. A3H3.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_34341_4
unknown

Not on your lists

comp(1981..2799)
-----------------
DNA (819bp)
protein (273aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_34341_5
Rubidibacter lacunae, Rubidibacter, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

2859..3812
-----------------
DNA (954bp)
protein (318aa)
Dienelactone hydrolase {ECO:0000313|EMBL:ERN42805.1}; EC=3.1.1.45 {ECO:0000313|EMBL:ERN42805.1};; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Rubidibacter.;" source="Rubidibacter lacunae KORDI 51-2.;"
carboxymethylenebutenolidase (EC:3.1.1.45)
hypothetical protein Tax=filamentous cyanobacterium ESFC-1 RepID=UPI00037FB433
PLM4_65_b1_redo_sep16_scaffold_34341_6
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

3809..4156
-----------------
DNA (348bp)
protein (116aa)
Putative translation initiation factor SUI1 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Bdellovibrio bacteriovorus genus=Bdellovibrio taxon_order=Bdellovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
translation initiation factor SUI1
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_34341_7
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(4176..4559)
-----------------
DNA (384bp)
protein (128aa)
cupin 2 barrel domain-containing protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=unknown genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
cupin 2 barrel domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_34341_8
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4785..5036)
-----------------
DNA (252bp)
protein (84aa)
Putative permease, DMT superfamily Tax=Leptolyngbya sp. PCC 7375 RepID=K9F5W3_9CYAN
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
Displaying 8 items

View Taxonomy