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PLM4_65_b1_redo_sep16_scaffold_355

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_355_1
Plesiocystis pacifica, Plesiocystis, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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1..255
-----------------
DNA (255bp)
protein (85aa)
Uncharacterized protein Tax=Plesiocystis pacifica SIR-1 RepID=A6GIB8_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EDM74371.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Plesiocystis.;" source="Plesiocystis pacifica SIR-1.;"
PLM4_65_b1_redo_sep16_scaffold_355_2
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

364..3387
-----------------
DNA (3024bp)
protein (1008aa)
Protein kinase domain, Two component regulator propeller Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDL4_CHLTF
protein kinase domain-containing protein
Protein kinase domain, Two component regulator propeller {ECO:0000313|EMBL:AEP12474.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
PLM4_65_b1_redo_sep16_scaffold_355_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(3384..4583)
-----------------
DNA (1200bp)
protein (400aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LDZ6_CHLTF
PLM4_65_b1_redo_sep16_scaffold_355_4
[Bacillus] selenitireducens, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(4594..5010)
-----------------
DNA (417bp)
protein (139aa)
hypothetical protein Tax=Geopsychrobacter electrodiphilus RepID=UPI00037AAAF2
thioesterase superfamily protein
Thioesterase superfamily protein {ECO:0000313|EMBL:ADH99382.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Sporolactobacillaceae; unclassified Sporolactobacillaceae.;" source="Bacillus selenitireducens (strain ATCC 700615 / DSM 15326 / MLS10).;"
PLM4_65_b1_redo_sep16_scaffold_355_5
unknown

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comp(5087..5944)
-----------------
DNA (858bp)
protein (286aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_355_6

Not on your lists

6069..6596
-----------------
DNA (528bp)
protein (176aa)
Family 3 carbonic anhydrase Tax=mine drainage metagenome RepID=T1B106_9ZZZZ
Family 3 carbonic anhydrase {ECO:0000313|EMBL:EQD62273.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
carbonic anhydrase/acetyltransferase
PLM4_65_b1_redo_sep16_scaffold_355_7
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists


6599..7957
-----------------
DNA (1359bp)
protein (453aa)
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
Histidine--tRNA ligase Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1FAF0_ACIC5
PLM4_65_b1_redo_sep16_scaffold_355_8
Geobacillus sp. JF8, Geobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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8010..9749
-----------------
DNA (1740bp)
protein (580aa)
Aspartate--tRNA ligase Tax=Geobacillus sp. JF8 RepID=S5ZR65_9BACI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGT32908.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus.;" source="Geobacillus sp. JF8.;"
PLM4_65_b1_redo_sep16_scaffold_355_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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9757..10872
-----------------
DNA (1116bp)
protein (372aa)
3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacillariophyta tax=bin7_NC10_sister organism_group=NC10
3-dehydroquinate synthase (EC:4.2.3.4)
Tax=CSP1_6_Rokubacteria
PLM4_65_b1_redo_sep16_scaffold_355_10
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

10907..12691
-----------------
DNA (1785bp)
protein (595aa)
Metal dependent phosphohydrolase Tax=Koribacter versatilis (strain Ellin345) RepID=Q1ILB4_KORVE
Uncharacterized protein {ECO:0000313|EMBL:KDA53578.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
metal dependent phosphohydrolase
PLM4_65_b1_redo_sep16_scaffold_355_11
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

12722..13093
-----------------
DNA (372bp)
protein (124aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA53576.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
PLM4_65_b1_redo_sep16_scaffold_355_12
Heliobacterium modesticaldum, Heliobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13100..14110
-----------------
DNA (1011bp)
protein (337aa)
Signal recognition particle receptor FtsY Tax=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) RepID=B0TGW9_HELMI
ftsY; signal recognition particle-docking protein ftsy
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Heliobacteriaceae; Heliobacterium.;" source="Heliobacterium modesticaldum (strain ATCC 51547 / Ice1).;"
PLM4_65_b1_redo_sep16_scaffold_355_13
Thermaerobacter marianensis, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14172..15215
-----------------
DNA (1044bp)
protein (348aa)
diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC:1.1.1.193 3.5.4.26)
Diaminohydroxyphosphoribosylaminopyrimidine deaminase 5-amino-6-(5-phosphoribosylamino)uracil reductase {ECO:0000313|EMBL:ADU52073.1}; EC=1.1.1.193 {ECO:0000313|EMBL:ADU52073.1};; EC=3.5.4.26 {ECO:0000313|EMBL:ADU52073.1};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM; 10246 / 7p75a).;"
Diaminohydroxyphosphoribosylaminopyrimidine deaminase 5-amino-6-(5-phosphoribosylamino)uracil reductase Tax=Thermaerobacter marianensis (strain ATCC 700841 / DSM 12885 / JCM 10246 / 7p75a) RepID=E6SJ49_THEM7
PLM4_65_b1_redo_sep16_scaffold_355_14
Propionibacterium freudenreichii, Propionibacterium, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15179..15817
-----------------
DNA (639bp)
protein (213aa)
ribC; riboflavin synthase subunit alpha (EC:2.5.1.9)
Riboflavin synthase alpha chain {ECO:0000313|EMBL:CEH08698.1}; EC=2.5.1.9 {ECO:0000313|EMBL:CEH08698.1};; species="Bacteria; Actinobacteria; Propionibacteriales; Propionibacteriaceae; Propionibacterium.;" source="Propionibacterium freudenreichii.;"
Riboflavin synthase alpha chain Tax=Propionibacterium freudenreichii subsp. shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1) RepID=D7GGI7_PROFC
PLM4_65_b1_redo_sep16_scaffold_355_15
unknown

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15979..16800
-----------------
DNA (822bp)
protein (274aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_355_16
Ruminococcus flavefaciens, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16797..17900
-----------------
DNA (1104bp)
protein (368aa)
oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
hypothetical protein Tax=Ruminococcus flavefaciens RepID=UPI0002E589C7
Uncharacterized protein {ECO:0000313|EMBL:EWM52529.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus flavefaciens 007c.;"
PLM4_65_b1_redo_sep16_scaffold_355_17
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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17911..19005
-----------------
DNA (1095bp)
protein (365aa)
threonine aldolase (EC:4.1.2.5)
threonine aldolase Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI0003679CC7
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM4_65_b1_redo_sep16_scaffold_355_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

19026..19982
-----------------
DNA (957bp)
protein (319aa)
Pyridoxal-5'-phosphate-dependent enzyme, beta subunit Tax=Solibacter usitatus (strain Ellin6076) RepID=Q025L3_SOLUE
pyridoxal-5'-phosphate-dependent protein subunit beta
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_355_19
Epilithonimonas lactis, Epilithonimonas, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

20374..20742
-----------------
DNA (369bp)
protein (123aa)
PF09832 family protein Tax=Leptospira broomii serovar Hurstbridge str. 5399 RepID=T0FA98_9LEPT
Uncharacterized protein {ECO:0000313|EMBL:KFC23206.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Epilithonimonas.;" source="Epilithonimonas lactis.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_355_20
Deinococcus maricopensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

Not on your lists

comp(20739..21155)
-----------------
DNA (417bp)
protein (139aa)
Endoribonuclease L-PSP Tax=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) RepID=E8U4P8_DEIML
endoribonuclease L-PSP
Endoribonuclease L-PSP {ECO:0000313|EMBL:ADV68913.1}; species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946; / LB-34).;"
PLM4_65_b1_redo_sep16_scaffold_355_21
Desulfotomaculum hydrothermale, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21152..21697)
-----------------
DNA (546bp)
protein (182aa)
Hypoxanthine-guanine phosphoribosyltransferase {ECO:0000313|EMBL:CCO09196.1}; EC=2.4.2.8 {ECO:0000313|EMBL:CCO09196.1};; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum hydrothermale Lam5 = DSM 18033.;"
Hypoxanthine-guanine phosphoribosyltransferase Tax=Desulfotomaculum hydrothermale Lam5 = DSM 18033 RepID=K8EKY6_9FIRM
hypoxanthine-guanine phosphoribosyltransferase
PLM4_65_b1_redo_sep16_scaffold_355_22
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

21731..23269
-----------------
DNA (1539bp)
protein (513aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54295.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
PLM4_65_b1_redo_sep16_scaffold_355_23
S_OP1_64_32, KB1, Bacteria

Not on your lists

comp(23322..24152)
-----------------
DNA (831bp)
protein (277aa)
purine nucleoside phosphorylase Tax=Mycobacterium hassiacum RepID=UPI000317F3EC
purine nucleoside phosphorylase I
Tax=S_OP1_64_32
PLM4_65_b1_redo_sep16_scaffold_355_24
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

24197..25693
-----------------
DNA (1497bp)
protein (499aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
lysS; Lysyl-tRNA synthetase (LysRS) (EC:6.1.1.6) bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
lysS; Lysyl-tRNA synthetase (LysRS) (EC:6.1.1.6)
PLM4_65_b1_redo_sep16_scaffold_355_25
RBG_19FT_COMBO_Aminicenantes_65_30_curated, Aminicenantes, Bacteria

Not on your lists

25690..26880
-----------------
DNA (1191bp)
protein (397aa)
lolC; lipoprotein releasing system transmembrane protein LolC; K09808 lipoprotein-releasing system permease protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
lipoprotein releasing system transmembrane protein LolC/E family
Tax=RBG_19FT_COMBO_Aminicenantes_65_30_curated
PLM4_65_b1_redo_sep16_scaffold_355_26
R_NC10_66_22, NC10, Bacteria

Not on your lists

26891..27574
-----------------
DNA (684bp)
protein (228aa)
lolD; lipoprotein-releasing system ABC transporter ATP-binding protein lolD bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
lolD; lipoprotein-releasing system ABC transporter ATP-binding protein lolD
Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
PLM4_65_b1_redo_sep16_scaffold_355_27
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

27614..30040
-----------------
DNA (2427bp)
protein (809aa)
ATPase; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
clpC; ATP-dependent Clp protease, ATP-binding subunit ClpC
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_355_28
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

30115..32439
-----------------
DNA (2325bp)
protein (775aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA53615.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
outer membrane protein assembly complex, YaeT protein; K07277 outer membrane protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Surface antigen (D15)
PLM4_65_b1_redo_sep16_scaffold_355_29
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

32458..33021
-----------------
DNA (564bp)
protein (188aa)
hypothetical protein Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI0003686FED
outer membrane chaperone skp (omph)
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_355_30
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

33025..34089
-----------------
DNA (1065bp)
protein (355aa)
UDP-3-O-acylglucosamine N-acyltransferase {ECO:0000256|HAMAP-Rule:MF_00523}; EC=2.3.1.- {ECO:0000256|HAMAP-Rule:MF_00523};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase (EC:2.3.1.191)
UDP-3-O-acylglucosamine N-acyltransferase Tax=Thermosinus carboxydivorans Nor1 RepID=A1HU27_9FIRM
Displaying items 1-30 of 47 in total

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