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PLM4_65_b1_redo_sep16_scaffold_619

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_619_1
unknown

Not on your lists

3..107
-----------------
DNA (105bp)
protein (35aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_619_2
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists


comp(221..1984)
-----------------
DNA (1764bp)
protein (588aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00011671}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01569, ECO:0000256|SAAS:SAAS00173448};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01569}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Proline--tRNA ligase Tax=Geobacter sulfurreducens RepID=SYP_GEOSL
proS; prolyl-tRNA ligase
PLM4_65_b1_redo_sep16_scaffold_619_3
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(2012..3883)
-----------------
DNA (1872bp)
protein (624aa)
Uncharacterized protein Tax=Holophaga foetida DSM 6591 RepID=H1P3J1_9BACT
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_619_4
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(3870..4796)
-----------------
DNA (927bp)
protein (309aa)
3-hydroxybutyryl-CoA dehydrogenase {ECO:0000313|EMBL:KDA53062.1}; EC=1.1.1.157 {ECO:0000313|EMBL:KDA53062.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
mmgB; 3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.157)
3-hydroxybutyryl-CoA dehydrogenase Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00036EAF33
PLM4_65_b1_redo_sep16_scaffold_619_5
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

Not on your lists

comp(4871..5890)
-----------------
DNA (1020bp)
protein (340aa)
hypothetical protein Tax=unclassified Aminicenantes RepID=UPI0003808310
Tax=RBG_13_Aminicenantes_62_12_curated
PLM4_65_b1_redo_sep16_scaffold_619_6
unknown

Not on your lists

comp(5853..6518)
-----------------
DNA (666bp)
protein (222aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_619_7
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

Not on your lists

comp(6536..7132)
-----------------
DNA (597bp)
protein (199aa)
RNA polymerase ECF-type sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
RNA polymerase ECF-type sigma factor
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
PLM4_65_b1_redo_sep16_scaffold_619_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(7205..9313)
-----------------
DNA (2109bp)
protein (703aa)
Peptidyl-prolyl cis-trans isomerase PpiA protein Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2TM37_9DELT
peptidyl-prolyl cis-trans isomerase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_619_9
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(9377..10120)
-----------------
DNA (744bp)
protein (248aa)
metallophosphoesterase bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
metallophosphoesterase
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_619_10
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(10108..10623)
-----------------
DNA (516bp)
protein (172aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Shikimate kinase Tax=uncultured prokaryote RepID=H5SKV6_9ZZZZ
putative shikimate kinase
PLM4_65_b1_redo_sep16_scaffold_619_11
Acidobacterium capsulatum, Acidobacterium, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(10620..11255)
-----------------
DNA (636bp)
protein (212aa)
thiE; thiamine-phosphate diphosphorylase (EC:2.5.1.3)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Acidobacterium.;" source="Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670 /; NBRC 15755 / NCIMB 13165 / 161).;"
Thiamine-phosphate synthase Tax=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) RepID=C1F8J4_ACIC5
PLM4_65_b1_redo_sep16_scaffold_619_12
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11548..11814
-----------------
DNA (267bp)
protein (89aa)
Uncharacterized protein Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08Z07_STIAD
Uncharacterised protein {ECO:0000313|EMBL:CRE09403.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
PLM4_65_b1_redo_sep16_scaffold_619_13
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(12553..13035)
-----------------
DNA (483bp)
protein (161aa)
Acetyl-CoA carboxylase biotin carboxyl carrier protein Tax=uncultured prokaryote RepID=H5SKV8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:KDA52985.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
acetyl-CoA carboxylase, biotin carboxyl carrier protein
PLM4_65_b1_redo_sep16_scaffold_619_14
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

comp(13043..13399)
-----------------
DNA (357bp)
protein (119aa)
Putative distant relative of homeotic protein bithoraxoid Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LIR2_CHLTF
hypothetical protein
Tax=RBG_16_Nitrospirae_64_22_curated
PLM4_65_b1_redo_sep16_scaffold_619_15
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(13389..14693)
-----------------
DNA (1305bp)
protein (435aa)
Tetratricopeptide TPR_2 repeat protein Tax=Anaeromyxobacter sp. (strain K) RepID=B4UEW1_ANASK
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_619_16
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

Not on your lists

comp(14864..15787)
-----------------
DNA (924bp)
protein (308aa)
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
cell surface protein
Tax=RBG_13_OP8X_37_8_curated
PLM4_65_b1_redo_sep16_scaffold_619_17
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15928..17595)
-----------------
DNA (1668bp)
protein (556aa)
Uncharacterized protein Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z8A7_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM89854.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
PLM4_65_b1_redo_sep16_scaffold_619_18
unknown

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comp(17614..18159)
-----------------
DNA (546bp)
protein (182aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_619_19
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(18182..20839)
-----------------
DNA (2658bp)
protein (886aa)
Type II and III secretion system protein Tax=uncultured prokaryote RepID=H5SKW3_9ZZZZ
type II and III secretion system protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_619_20
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(20883..21404)
-----------------
DNA (522bp)
protein (174aa)
Type IV pilus assembly protein PilP Tax=uncultured prokaryote RepID=H5SKW4_9ZZZZ
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_619_21
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(21410..22036)
-----------------
DNA (627bp)
protein (209aa)
Type IV pilus assembly protein PilO Tax=uncultured prokaryote RepID=H5SKW5_9ZZZZ
pilus assembly protein PilO
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_619_22

Not on your lists

comp(22049..22756)
-----------------
DNA (708bp)
protein (236aa)
Type IV pilus assembly protein PilN Tax=uncultured prokaryote RepID=H5SKW6_9ZZZZ
Type IV pilus assembly protein PilN {ECO:0000313|EMBL:BAL56802.1}; species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_619_23

Not on your lists

comp(22762..23817)
-----------------
DNA (1056bp)
protein (352aa)
Type IV pilus assembly protein PilM Tax=uncultured prokaryote RepID=H5SKW7_9ZZZZ
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:BAL56803.1}; species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
pilM; type IV pilus biogenesis ATPase PilM
PLM4_65_b1_redo_sep16_scaffold_619_24
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

Not on your lists


24086..24319
-----------------
DNA (234bp)
protein (78aa)
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
ribosomal protein L28
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_619_25
R_Acidobacteria_65_29, Acidobacteria, Bacteria

Not on your lists

comp(24363..26603)
-----------------
DNA (2241bp)
protein (747aa)
(P)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IVC0_KORVE
(p)ppGpp synthetase SpoT/RelA
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_619_26
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(26705..27910)
-----------------
DNA (1206bp)
protein (402aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI00035DC6CA
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
protein-export membrane protein SecF
PLM4_65_b1_redo_sep16_scaffold_619_27

Not on your lists

comp(27947..29530)
-----------------
DNA (1584bp)
protein (528aa)
Preprotein translocase subunit SecD Tax=uncultured prokaryote RepID=H5SKX1_9ZZZZ
Preprotein translocase subunit SecD {ECO:0000313|EMBL:BAL56807.1}; species="unclassified sequences; environmental samples.;" source="uncultured prokaryote.;"
protein-export membrane protein SecD
PLM4_65_b1_redo_sep16_scaffold_619_28
GWA2_OP3_52_12_curated, Omnitrophica, Bacteria

Not on your lists

comp(29527..29862)
-----------------
DNA (336bp)
protein (112aa)
preprotein translocase subunit YajC Tax=Omnitrophica bacterium SCGC AAA257-O07 RepID=UPI0003B653C5
preprotein translocase subunit YajC
Tax=GWA2_OP3_52_12_curated
PLM4_65_b1_redo_sep16_scaffold_619_29
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29933..31087)
-----------------
DNA (1155bp)
protein (385aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA).;"
Queuine tRNA-ribosyltransferase Tax=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) RepID=Q749X3_GEOSL
tgt-2; queuine tRNA-ribosyltransferase
PLM4_65_b1_redo_sep16_scaffold_619_30
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(31103..31882)
-----------------
DNA (780bp)
protein (260aa)
Outer membrane lipoprotein carrier protein LolA Tax=uncultured prokaryote RepID=H5SKX4_9ZZZZ
outer membrane lipoprotein-sorting protein
Tax=RBG_13_Acidobacteria_68_16_curated
Displaying items 1-30 of 51 in total

View Taxonomy