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PLM4_65_b1_redo_sep16_scaffold_947

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_947_1
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(1..498)
-----------------
DNA (498bp)
protein (166aa)
Uncharacterized protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A5C3_GEMAT
LmbE family protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_947_2
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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609..2114
-----------------
DNA (1506bp)
protein (502aa)
Uncharacterized protein Tax=Erythrobacter sp. NAP1 RepID=A3W9R2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:KEO88251.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_947_3
RIFOXYC2_FULL_Burkholderiales_59_8_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2313..3548
-----------------
DNA (1236bp)
protein (412aa)
Uncharacterized protein Tax=Pseudomonas RepID=F2KFJ8_PSEBN
hypothetical protein
Tax=RIFOXYC2_FULL_Burkholderiales_59_8_curated
PLM4_65_b1_redo_sep16_scaffold_947_4
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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3557..3985
-----------------
DNA (429bp)
protein (143aa)
Uncharacterized protein Tax=Pseudomonas fluorescens Q2-87 RepID=J2EI30_PSEFL
Uncharacterized protein {ECO:0000313|EMBL:EJL03070.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens Q2-87.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_947_5
Pseudomonas batumici, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3995..6328)
-----------------
DNA (2334bp)
protein (778aa)
Diguanylate cyclase (GGDEF)/cyclic diguanylate phosphodiesterase (EAL) domain protein Tax=Pseudomonas fluorescens Q2-87 RepID=J2Y5D7_PSEFL
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) {ECO:0000313|EMBL:KIH82891.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas batumici.;"
diguanylate cyclase
PLM4_65_b1_redo_sep16_scaffold_947_6

Not on your lists

6495..6941
-----------------
DNA (447bp)
protein (149aa)
Nucleotide-binding protein containing TIR-like domain protein Tax=mine drainage metagenome RepID=T1B0E8_9ZZZZ
Nucleotide-binding protein {ECO:0000313|EMBL:EQD74210.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
PLM4_65_b1_redo_sep16_scaffold_947_7
RBG_13_Actinobacteria_63_9_curated, Rubrobacteria, Actinobacteria, Bacteria

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7080..7337
-----------------
DNA (258bp)
protein (86aa)
Putative uncharacterized protein bin=GWB1_CP_36_13 species=Halanaerobium praevalens genus=Halanaerobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
hypothetical protein
Tax=RBG_13_Actinobacteria_63_9_curated
PLM4_65_b1_redo_sep16_scaffold_947_8
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

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7444..8010
-----------------
DNA (567bp)
protein (189aa)
Membrane-bound metal-dependent hydrolase Tax=Pedosphaera parvula Ellin514 RepID=B9XLS1_9BACT
membrane-bound metal-dependent hydrolase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM4_65_b1_redo_sep16_scaffold_947_9
BJP_IG2158_Thermincola_46_17, Thermincola, Clostridiales, Clostridia, Firmicutes, Bacteria

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8033..8440
-----------------
DNA (408bp)
protein (136aa)
hypothetical protein Tax=Desulfospira joergensenii RepID=UPI0003B58EBD
hypothetical protein
Tax=BJP_IG2158_Thermincola_46_17
PLM4_65_b1_redo_sep16_scaffold_947_10

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8689..9018
-----------------
DNA (330bp)
protein (110aa)
Uncharacterized protein Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YZD7_METPS
Uncharacterized protein {ECO:0000313|EMBL:AIA19151.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_947_11
Pelodictyon phaeoclathratiforme, Pelodictyon, Chlorobiales, Chlorobia, Chlorobi, Bacteria

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9015..9524
-----------------
DNA (510bp)
protein (170aa)
DinB family protein Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SFL6_PELPB
DinB family protein
DinB family protein {ECO:0000313|EMBL:ACF43271.1}; species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Pelodictyon.;" source="Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1).;"
PLM4_65_b1_redo_sep16_scaffold_947_12
R_OP3X_51_18, OP3X, Bacteria

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9652..10269
-----------------
DNA (618bp)
protein (206aa)
Uncharacterized protein Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5E8G0_GEOBB
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_OP3X_51_18_curated
PLM4_65_b1_redo_sep16_scaffold_947_13
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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10266..12629
-----------------
DNA (2364bp)
protein (788aa)
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9U5X5_9CYAN
Uncharacterized protein {ECO:0000313|EMBL:ETX02713.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
PLM4_65_b1_redo_sep16_scaffold_947_14
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12672..13091
-----------------
DNA (420bp)
protein (140aa)
hypothetical protein Tax=Pseudanabaena sp. PCC 6802 RepID=UPI000360D816
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY41160.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
PLM4_65_b1_redo_sep16_scaffold_947_15
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(13171..14163)
-----------------
DNA (993bp)
protein (331aa)
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase Tax=unclassified Thermoplasmatales RepID=M7U557_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KDA53879.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
(S)-2,3-Di-O-farnesylgeranylglyceryl synthase
PLM4_65_b1_redo_sep16_scaffold_947_16
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(14200..15540)
-----------------
DNA (1341bp)
protein (447aa)
Putative membrane protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJ21_CHLTF
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_947_17
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

comp(15528..16535)
-----------------
DNA (1008bp)
protein (336aa)
Putative uncharacterized protein Sb01g044880 Tax=Sorghum bicolor RepID=C5WUX1_SORBI
dTDP-4-dehydrorhamnose reductase, RmlD
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_947_18
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

Not on your lists

comp(16532..17503)
-----------------
DNA (972bp)
protein (324aa)
NAD-dependent epimerase/dehydratase Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B2A0_HERA2
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ABX07450.1}; species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
PLM4_65_b1_redo_sep16_scaffold_947_19
RLO_Nitrospinae_45_22, Nitrospinae, Bacteria

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comp(17511..18479)
-----------------
DNA (969bp)
protein (323aa)
hypothetical protein Tax=Paenibacillus ginsengihumi RepID=UPI0003686EA6
NAD-dependent epimerase
Tax=RIFCSPLOWO2_12_FULL_Nitrospinae_45_22_curated
PLM4_65_b1_redo_sep16_scaffold_947_20
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(18480..19331)
-----------------
DNA (852bp)
protein (284aa)
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
Putative dTDP-4-dehydrorhamnose reductase Tax=Streptomyces zinciresistens K42 RepID=G2GIR5_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KDA53865.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
PLM4_65_b1_redo_sep16_scaffold_947_21
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(19348..21726)
-----------------
DNA (2379bp)
protein (793aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
lptD; lipopolysaccharide biogenesis outer membrane protein LptD
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_947_22
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(21726..22904)
-----------------
DNA (1179bp)
protein (393aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KDA53153.1}; EC=2.3.1.9 {ECO:0000313|EMBL:KDA53153.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetoacetyl-CoA thiolase Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAZ2_9GAMM
PLM4_65_b1_redo_sep16_scaffold_947_23
S_OP1_64_32, KB1, Bacteria

Not on your lists

23016..23438
-----------------
DNA (423bp)
protein (141aa)
Putative Holliday junction resolvase Tax=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) RepID=RUVX_SYNP6
Holliday junction resolvase-like protein
Tax=S_OP1_64_32
PLM4_65_b1_redo_sep16_scaffold_947_24
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

23435..24538
-----------------
DNA (1104bp)
protein (368aa)
aminodeoxychorismate lyase; K07082 UPF0755 protein bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
aminodeoxychorismate lyase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_947_25
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

24713..26635
-----------------
DNA (1923bp)
protein (641aa)
Serine/threonine protein kinase Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MYH5_CORCM
Uncharacterized protein {ECO:0000313|EMBL:KDA53155.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
masK8; serine/threonine protein kinase
PLM4_65_b1_redo_sep16_scaffold_947_26
bacterium UASB270, Bacteria

Not on your lists

comp(26746..28200)
-----------------
DNA (1455bp)
protein (485aa)
OmpA/MotB domain protein Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WMJ2_VEREI
Uncharacterized protein {ECO:0000313|EMBL:GAK61697.1}; species="Bacteria.;" source="bacterium UASB270.;"
OmpA/MotB domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_947_27
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(28447..29268)
-----------------
DNA (822bp)
protein (274aa)
hypothetical protein bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_947_28
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(29386..29892)
-----------------
DNA (507bp)
protein (169aa)
ruvC; Holliday junction resolvase (EC:3.1.22.4)
Crossover junction endodeoxyribonuclease RuvC Tax=Frankia alni (strain ACN14a) RepID=RUVC_FRAAA
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_947_29
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

30061..31746
-----------------
DNA (1686bp)
protein (562aa)
protein kinase (EC:2.7.11.1)
Serine/threonine-protein kinase-like domain protein Tax=Holophaga foetida DSM 6591 RepID=H1NYY2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KDA53345.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Displaying 29 items

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