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PLM4_65_b1_redo_sep16_scaffold_8572

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_8572_1
RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated, Acidobacteria, Bacteria

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2..556
-----------------
DNA (555bp)
protein (185aa)
ABC transporter related Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01RQ6_SOLUE
ABC transporter-like protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated
PLM4_65_b1_redo_sep16_scaffold_8572_2
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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582..2057
-----------------
DNA (1476bp)
protein (492aa)
RNA polymerase sigma-54 factor bin=GWF2_Geobacter_54_21 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
rpoN; RNA polymerase sigma-54 factor RpoN
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_8572_3
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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2071..2622
-----------------
DNA (552bp)
protein (184aa)
Ribosomal subunit interface-associated sigma-54 modulation protein RaiA Tax=Geobacter sulfurreducens RepID=D7AJX0_GEOSK
raiA; ribosomal subunit interface-associated sigma-54 modulation protein RaiA
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_8572_4
Geoalkalibacter ferrihydriticus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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2642..3610
-----------------
DNA (969bp)
protein (323aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter ferrihydriticus DSM 17813.;"
HPr kinase/phosphorylase Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LNA9_HALO1
aldolase
PLM4_65_b1_redo_sep16_scaffold_8572_5
GWC2_Nitrospirae_56_14_curated, Nitrospirae, Bacteria

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3579..4484
-----------------
DNA (906bp)
protein (302aa)
UPF0042 nucleotide-binding protein yhbJ bin=GWC2_Nitrospirae-rel_56_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
Tax=GWC2_Nitrospirae_56_14_curated
PLM4_65_b1_redo_sep16_scaffold_8572_6
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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4481..4945
-----------------
DNA (465bp)
protein (155aa)
PTS system transporter subunit IIA (EC:2.7.1.69)
PTS system IIA component Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGJ3_CHLTF
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_8572_7
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4938..5207
-----------------
DNA (270bp)
protein (90aa)
Phosphotransferase system Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0CJF5_ALCDB
Uncharacterized protein {ECO:0000313|EMBL:KFN51405.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
ptsO; phosphotransferase system
PLM4_65_b1_redo_sep16_scaffold_8572_8
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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5204..6958
-----------------
DNA (1755bp)
protein (585aa)
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RXV6_THEOJ
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_8572_9
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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6971..7324
-----------------
DNA (354bp)
protein (118aa)
Cupin domain protein Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08N35_STIAD
cupin domain-containing protein
Cupin domain protein {ECO:0000313|EMBL:EAU61888.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
PLM4_65_b1_redo_sep16_scaffold_8572_10
unknown

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7311..8111
-----------------
DNA (801bp)
protein (267aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_8572_11
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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8108..9544
-----------------
DNA (1437bp)
protein (479aa)
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB bin=GWC2_Nitrospirae-rel_56_14 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
miaB; tRNA-i(6)A37 thiotransferase enzyme MiaB
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_8572_12
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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9623..10135
-----------------
DNA (513bp)
protein (171aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFA6_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE68435.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM4_65_b1_redo_sep16_scaffold_8572_13
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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10272..11000
-----------------
DNA (729bp)
protein (243aa)
chromosome partitioning ATPase; K03496 chromosome partitioning protein bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
chromosome partitioning ATPase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_8572_14
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

10993..11871
-----------------
DNA (879bp)
protein (293aa)
ParB-like partition protein Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEN8_CHLTF
ParB-like partition protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_8572_15
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(12056..12517)
-----------------
DNA (462bp)
protein (154aa)
6-pyruvoyl tetrahydrobiopterin synthase (PTPS) (PTP synthase) Tax=mine drainage metagenome RepID=E6QMF5_9ZZZZ
6-pyruvoyl tetrahydropterin synthase family protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_8572_16
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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12521..14998
-----------------
DNA (2478bp)
protein (826aa)
hypothetical protein Tax=Aminicenantes bacterium SCGC AAA252-O11 RepID=UPI000366C540
permease, YjgP/YjgQ family
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_8572_17
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(14995..16797)
-----------------
DNA (1803bp)
protein (601aa)
DNA polymerase IV (Family X) Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DBD1_SINAD
DNA polymerase IV
DNA polymerase IV (Family X) {ECO:0000313|EMBL:AGA26552.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM4_65_b1_redo_sep16_scaffold_8572_18
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(16820..17998)
-----------------
DNA (1179bp)
protein (393aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
S-adenosylmethionine synthetase (EC:2.5.1.6)
S-adenosylmethionine synthase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01VU0_SOLUE
PLM4_65_b1_redo_sep16_scaffold_8572_19
unknown

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comp(18068..18664)
-----------------
DNA (597bp)
protein (199aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_8572_20
unknown

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comp(18648..19322)
-----------------
DNA (675bp)
protein (225aa)

This feature has no annotations

Displaying 20 items

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