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PLM4_65_b1_redo_sep16_scaffold_5068

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_5068_1
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..726)
-----------------
DNA (726bp)
protein (242aa)
hypothetical protein Tax=Sulfobacillus thermosulfidooxidans RepID=UPI0002F908EA
biotin-(acetyl-CoA carboxylase) ligase
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
PLM4_65_b1_redo_sep16_scaffold_5068_2
CG_Delta_01, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(779..3469)
-----------------
DNA (2691bp)
protein (897aa)
Valine--tRNA ligase Tax=Geobacter sp. (strain M18) RepID=E8WPR0_GEOS8
valyl-tRNA synthetase
Tax=CG_Delta_01
PLM4_65_b1_redo_sep16_scaffold_5068_3
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3564..4394)
-----------------
DNA (831bp)
protein (277aa)
Response regulator Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08YB2_STIAD
response regulator
Response regulator {ECO:0000313|EMBL:EAU65466.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
PLM4_65_b1_redo_sep16_scaffold_5068_4
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4449..4907)
-----------------
DNA (459bp)
protein (153aa)
(R)-methylmalonyl-CoA mutase, adenosylcobamide-binding subunit Tax=Geobacter sulfurreducens RepID=D7AJ08_GEOSK
(R)-methylmalonyl-CoA mutase, adenosylcobamide-binding subunit
Methylmalonyl-CoA mutase {ECO:0000313|EMBL:AJY71541.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
PLM4_65_b1_redo_sep16_scaffold_5068_5
Peptococcaceae bacterium BRH_c23, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4917..5414)
-----------------
DNA (498bp)
protein (166aa)
Uncharacterized protein Tax=Desulfosporosinus orientis (strain ATCC 19365 / DSM 765 / NCIMB 8382 / VKM B-1628) RepID=G7WIJ8_DESOD
Damage-inducible protein DinB {ECO:0000313|EMBL:KJS50424.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium BRH_c23.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_5068_6
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

Not on your lists

comp(5422..7158)
-----------------
DNA (1737bp)
protein (579aa)
methylmalonyl-CoA mutase (EC:5.4.99.2)
Methylmalonyl-CoA mutase bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_5068_7
RBG_13_Chloroflexi_56_8_curated, Chloroflexi, Bacteria

Not on your lists

comp(7252..8190)
-----------------
DNA (939bp)
protein (313aa)
glycosyl transferase family protein (EC:2.4.1.-)
Putative glycosyltransferase (Family 2) Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W811_UNCMA
Tax=RBG_13_Chloroflexi_56_8_curated
PLM4_65_b1_redo_sep16_scaffold_5068_8
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(8187..9332)
-----------------
DNA (1146bp)
protein (382aa)
acyl-CoA dehydrogenase Tax=Caldibacillus debilis RepID=UPI00037D7F2F
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KDA53723.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
short chain acyl-CoA dehydrogenase
PLM4_65_b1_redo_sep16_scaffold_5068_9
R_Deltaproteobacteria_43_9, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9341..10486)
-----------------
DNA (1146bp)
protein (382aa)
bcd2; butyryl-CoA dehydrogenase (EC:1.3.99.2)
Acyl-CoA dehydrogenase domain protein bin=GWA2_Deltaproteo_65_63 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Deltaproteo_65_63 organism_group=Deltaproteobacteria
Tax=RIFCSPHIGHO2_12_FULL_Deltaproteobacteria_43_9_curated
PLM4_65_b1_redo_sep16_scaffold_5068_10
unknown

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10597..10848
-----------------
DNA (252bp)
protein (84aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5068_11
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(10892..11518)
-----------------
DNA (627bp)
protein (209aa)
orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase bin=GWC2_Nitrospirae_57_13 species=Thermovibrio ammonificans genus=Thermovibrio taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWC2_Nitrospirae_57_13 organism_group=Nitrospirae organism_desc=Same as C1_57_7 and D2_57_8
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_5068_12
RBG_16_Aminicenantes_66_30_curated, Aminicenantes, Bacteria

Not on your lists

comp(11469..12863)
-----------------
DNA (1395bp)
protein (465aa)
Fis family two component sigma54 specific transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
two component sigma-54 specific Fis family transcriptional regulator
Tax=RBG_16_Aminicenantes_66_30_curated
PLM4_65_b1_redo_sep16_scaffold_5068_13
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(12950..14401)
-----------------
DNA (1452bp)
protein (484aa)
protease Do (EC:3.4.21.107)
hypothetical protein Tax=Loktanella hongkongensis RepID=UPI0003715AA8
Uncharacterized protein {ECO:0000313|EMBL:KDA53158.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
PLM4_65_b1_redo_sep16_scaffold_5068_14
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

14672..15136
-----------------
DNA (465bp)
protein (155aa)
ribosome maturation protein RimP Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI00037D5087
ribosome maturation protein RimP
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM4_65_b1_redo_sep16_scaffold_5068_15
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

15149..16663
-----------------
DNA (1515bp)
protein (505aa)
NusA antitermination factor; K02600 N utilization substance protein A bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
transcription termination factor NusA
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_5068_16
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

16718..19612
-----------------
DNA (2895bp)
protein (965aa)
Translation initiation factor IF-2 Tax=Koribacter versatilis (strain Ellin345) RepID=IF2_KORVE
translation initiation factor 2
Translation initiation factor IF-2 {ECO:0000255|HAMAP-Rule:MF_00100}; species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
PLM4_65_b1_redo_sep16_scaffold_5068_17
CG_Delta_04, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19621..19914
-----------------
DNA (294bp)
protein (98aa)
Uncharacterized protein Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FCY6_DESAA
hypothetical protein
Tax=CG_Delta_04
PLM4_65_b1_redo_sep16_scaffold_5068_18
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19911..20225
-----------------
DNA (315bp)
protein (105aa)
Ribosome-binding factor A Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6PY50_9FIRM
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter subterraneus DSM 13965.;"
rbfA; ribosome-binding factor A
Displaying 18 items

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