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PLM4_65_b1_redo_sep16_scaffold_5130

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_5130_1

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3..623
-----------------
DNA (621bp)
protein (207aa)
Marine sediment metagenome DNA, contig: S01H4_S01079 {ECO:0000313|EMBL:GAG78846.1}; Flags: Fragment;; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase bin=GWA2_Elusimicrobia_69_24 species=Dehalogenimonas lykanthroporepellens genus=Dehalogenimonas taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
PLM4_65_b1_redo_sep16_scaffold_5130_2

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620..1045
-----------------
DNA (426bp)
protein (142aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN33453.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Methyl-viologen-reducing hydrogenase delta subunit bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
methyl-viologen-reducing hydrogenase subunit delta
PLM4_65_b1_redo_sep16_scaffold_5130_3

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1042..1245
-----------------
DNA (204bp)
protein (68aa)
Marine sediment metagenome DNA, contig: S01H4_L02379 {ECO:0000313|EMBL:GAG69225.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
PLM4_65_b1_redo_sep16_scaffold_5130_4

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1291..2214
-----------------
DNA (924bp)
protein (308aa)
NADH ubiquinone oxidoreductase 20 kDa subunit; K14128 F420-non-reducing hydrogenase subunit G [EC:1.12.99.-] bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Uncharacterized protein {ECO:0000313|EMBL:KKN31914.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
NADH ubiquinone oxidoreductase 20 kDa subunit
PLM4_65_b1_redo_sep16_scaffold_5130_5

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2218..3660
-----------------
DNA (1443bp)
protein (481aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN31913.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Nickel-dependent hydrogenase large subunit bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
nickel-dependent hydrogenase large subunit
PLM4_65_b1_redo_sep16_scaffold_5130_6

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3671..4264
-----------------
DNA (594bp)
protein (198aa)
Hydrogenase maturation protease bin=CD_OP8_4m species=unknown genus=Dehalococcoides taxon_order=Dehalococcoidales taxon_class=Dehalococcoidia phylum=Chloroflexi tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
Uncharacterized protein {ECO:0000313|EMBL:KKN31912.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hyaD2; protein HyaD2
PLM4_65_b1_redo_sep16_scaffold_5130_7
RBG_16_Actinobacteria_70_17_curated, Acidimicrobiia, Actinobacteria, Bacteria

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4323..4979
-----------------
DNA (657bp)
protein (219aa)
MarR family transcriptional regulator Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WAC5_9ACTO
MarR family transcriptional regulator
Tax=RBG_16_Actinobacteria_70_17_curated
PLM4_65_b1_redo_sep16_scaffold_5130_8
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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5043..5318
-----------------
DNA (276bp)
protein (92aa)
Hydrogenase assembly chaperone hypC/hupF Tax=Anaeromyxobacter RepID=B4UBT6_ANASK
hydrogenase assembly chaperone HypC/HupF
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_5130_9
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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5326..6477
-----------------
DNA (1152bp)
protein (384aa)
Hydrogenase formation HypD protein Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7H7N4_ANADF
hydrogenase formation HypD protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_5130_10
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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6540..7514
-----------------
DNA (975bp)
protein (325aa)
Hydrogenase expression/formation protein HypE Tax=Anaeromyxobacter sp. (strain K) RepID=B4UBT4_ANASK
hydrogenase expression/formation protein HypE
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_5130_11
R_Acidobacteria_68_18, Acidobacteria, Bacteria

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7533..8369
-----------------
DNA (837bp)
protein (279aa)
Putative enoyl-CoA hydratase bin=GWA2_Methylomirabilis_73_35 species=Caulobacter vibrioides genus=Caulobacter taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Enoyl-CoA hydratase/isomerase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_5130_12
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8495..9199)
-----------------
DNA (705bp)
protein (235aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
Ribosomal RNA small subunit methyltransferase I Tax=alpha proteobacterium BAL199 RepID=A8TLP7_9PROT
uroporphyrin-III C/tetrapyrrole methyltransferase
PLM4_65_b1_redo_sep16_scaffold_5130_13
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(9251..10087)
-----------------
DNA (837bp)
protein (279aa)
NAD+ synthetase (EC:6.3.1.5)
NH(3)-dependent NAD(+) synthetase {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812}; EC=6.3.1.5 {ECO:0000256|HAMAP-Rule:MF_00193, ECO:0000256|RuleBase:RU003812};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC; 27009 / DSM 446 / JCM 5260 / NBRC 15652 / NCIMB 11725 / NRRL B-14509 /; 104-1A) (Bacillus acidocaldarius).;"
NH(3)-dependent NAD(+) synthetase Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WQI2_ALIAD
PLM4_65_b1_redo_sep16_scaffold_5130_14
RBG_16_Chloroflexi_57_11_curated, Chloroflexi, Bacteria

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comp(10084..10920)
-----------------
DNA (837bp)
protein (279aa)
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase Tax=uncultured Acidobacteria bacterium RepID=H5S9F0_9BACT
nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
Tax=RBG_16_Chloroflexi_57_11_curated
PLM4_65_b1_redo_sep16_scaffold_5130_15
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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10959..11741
-----------------
DNA (783bp)
protein (261aa)
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_5130_16
R_OP11_Gottesmanbacteria_39_12b, Gottesmanbacteria, Microgenomates, Bacteria

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11832..13364
-----------------
DNA (1533bp)
protein (511aa)
Polymorphic membrane protein Chlamydia Tax=Bacteroides sp. CAG:20 RepID=R5F2V1_9BACE
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OP11_Gottesmanbacteria_39_12b_curated
PLM4_65_b1_redo_sep16_scaffold_5130_17
unknown

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comp(13361..13573)
-----------------
DNA (213bp)
protein (71aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5130_18
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13557..13850)
-----------------
DNA (294bp)
protein (98aa)
Putative uncharacterized protein Tax=Chloroflexus RepID=A9WJ36_CHLAA
conserved hypothetical protein
Thiolapillus brandeum DNA, complete genome {ECO:0000313|EMBL:BAO45119.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
Displaying 18 items

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