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PLM4_65_b1_redo_sep16_scaffold_5509

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_5509_1
unknown

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1..207
-----------------
DNA (207bp)
protein (69aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5509_2
unknown

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200..706
-----------------
DNA (507bp)
protein (169aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5509_3
Methylobacillus flagellatus, Methylobacillus, Methylophilales, Betaproteobacteria, Proteobacteria, Bacteria

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718..1926
-----------------
DNA (1209bp)
protein (403aa)
FAD dependent oxidoreductase Tax=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) RepID=Q1H465_METFK
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ABE48722.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Methylophilales; Methylophilaceae; Methylobacillus.;" source="Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875).;"
PLM4_65_b1_redo_sep16_scaffold_5509_4
Thioalkalivibrio sulfidiphilus, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1997..3397
-----------------
DNA (1401bp)
protein (467aa)
Transporter Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GNW2_THISH
sodium:neurotransmitter symporter
Transporter {ECO:0000256|RuleBase:RU003732}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sulfidiphilus (strain HL-EbGR7).;"
PLM4_65_b1_redo_sep16_scaffold_5509_5
CG_Anaero_04, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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3507..3986
-----------------
DNA (480bp)
protein (160aa)
Tax=CG_Anaero_04
PLM4_65_b1_redo_sep16_scaffold_5509_6
unknown

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comp(3983..4417)
-----------------
DNA (435bp)
protein (145aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5509_7
Sandaracinus amylolyticus, Sandaracinus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(4469..5266)
-----------------
DNA (798bp)
protein (266aa)
hypothetical protein Tax=Halomonas smyrnensis RepID=UPI0002FA8006
Beta-ketoadipate enol-lactone hydrolase {ECO:0000313|EMBL:AKF06730.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Sandaracinaceae; Sandaracinus.;" source="Sandaracinus amylolyticus.;"
3-oxoadipate enol-lactone hydrolase
PLM4_65_b1_redo_sep16_scaffold_5509_8
Jejuia pallidilutea, Jejuia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(5408..6958)
-----------------
DNA (1551bp)
protein (517aa)
Extracellular nuclease Tax=Rhodopirellula sp. SWK7 RepID=M5T5K2_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:GAL88015.1}; species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Jejuia.;" source="Jejuia pallidilutea.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_5509_9
Desulfosporosinus sp. I2, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7454..8482)
-----------------
DNA (1029bp)
protein (343aa)
UniRef90_E6PCH0 6-hydroxycylohex-1-ene-1-carboxyl-CoA dehydrogenase Tax=mine drainage metagenome RepID=E6PCH0_9ZZZZ bin=RBG9 species=mine drainage metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=RBG9 organism_group=Chloroflexi
Alcohol dehydrogenase {ECO:0000313|EMBL:KJR48158.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus sp. I2.;"
Zn-binding dehydrogenase
PLM4_65_b1_redo_sep16_scaffold_5509_10
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(8479..8820)
-----------------
DNA (342bp)
protein (114aa)
Putative uncharacterized protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_5509_11
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

Not on your lists

comp(8823..9668)
-----------------
DNA (846bp)
protein (282aa)
CoA-substrate-specific enzyme activase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Azoarcus sp. CIB genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
CoA-substrate-specific enzyme activase
Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
PLM4_65_b1_redo_sep16_scaffold_5509_12
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(9665..10504)
-----------------
DNA (840bp)
protein (280aa)
CoA-substrate-specific enzyme activase bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Azoarcus sp. CIB genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
CoA-substrate-specific enzyme activase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_5509_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(10515..11891)
-----------------
DNA (1377bp)
protein (459aa)
2-hydroxyglutaryl-CoA dehydratase subunit D; K04113 benzoyl-CoA reductase subunit [EC:1.3.7.8] bin=bin7_NC10_sister species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=bin7_NC10_sister organism_group=NC10
2-hydroxyglutaryl-CoA dehydratase subunit D
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_5509_14
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

Not on your lists

comp(11902..13083)
-----------------
DNA (1182bp)
protein (394aa)
2-hydroxyglutaryl-CoA dehydratase subunit D; K04112 benzoyl-CoA reductase subunit [EC:1.3.7.8] bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Azoarcus sp. CIB genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
2-hydroxyglutaryl-CoA dehydratase subunit D
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_5509_15
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(13080..14153)
-----------------
DNA (1074bp)
protein (358aa)
Naphthoate synthase (Fragment) Tax=mine drainage metagenome RepID=T1CRV7_9ZZZZ
enoyl-CoA hydratase/isomerase
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_5509_16
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

14238..14702
-----------------
DNA (465bp)
protein (155aa)
MaoC domain-containing protein dehydratase
MaoC-related acyl dehydratase bin=bin7_NC10_sister species=Thermus thermophilus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM4_65_b1_redo_sep16_scaffold_5509_17
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(14699..15565)
-----------------
DNA (867bp)
protein (289aa)
Transcriptional regulator, PaaX family Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L9I0_9BACI bin=RBG9 species=Caldalkalibacillus thermarum genus=Caldalkalibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=RBG9 organism_group=Chloroflexi
paaX; phenylacetic acid degradation operon negative regulatory protein
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_5509_18
Sphaerochaeta pleomorpha, Sphaerochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

15723..16166
-----------------
DNA (444bp)
protein (148aa)
Putative redox protein, regulator of disulfide bond formation Tax=Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes) RepID=G8QST5_SPHPG
putative redox protein, regulator of disulfide bond formation
Putative redox protein, regulator of disulfide bond formation {ECO:0000313|EMBL:AEV30117.1}; species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Sphaerochaeta.;" source="Sphaerochaeta pleomorpha (strain ATCC BAA-1885 / DSM 22778 / Grapes).;"
PLM4_65_b1_redo_sep16_scaffold_5509_19
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

16384..17355
-----------------
DNA (972bp)
protein (324aa)
hypothetical protein Tax=Gemmata obscuriglobus RepID=UPI00016C5525
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
PLM4_65_b1_redo_sep16_scaffold_5509_20
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

Not on your lists

17389..18324
-----------------
DNA (936bp)
protein (312aa)
Acid phosphatase Tax=Cellvibrio sp. BR RepID=I3IFX9_9GAMM
acid phosphatase
Tax=RBG_13_Aminicenantes_62_12_curated
PLM4_65_b1_redo_sep16_scaffold_5509_21
Thiothrix nivea, Thiothrix, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18324..18689
-----------------
DNA (366bp)
protein (122aa)
O(6)-alkylguanine repair protein YbaZ Tax=Thiothrix nivea DSM 5205 RepID=I3BNU2_9GAMM
O(6)-alkylguanine repair protein YbaZ {ECO:0000313|EMBL:EIJ33035.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thiothrix.;" source="Thiothrix nivea DSM 5205.;"
methyltransferase
PLM4_65_b1_redo_sep16_scaffold_5509_22
Thioalkalivibrio sp. K90mix, Thioalkalivibrio, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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18686..19366
-----------------
DNA (681bp)
protein (227aa)
hypothetical protein Tax=Thioalkalivibrio RepID=UPI000365A266
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADC70998.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Thioalkalivibrio.;" source="Thioalkalivibrio sp. (strain K90mix).;"
PLM4_65_b1_redo_sep16_scaffold_5509_23
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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19411..20673
-----------------
DNA (1263bp)
protein (421aa)
Peptidase M28 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBE2_9GAMM
NODE_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96240.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
peptidase M28
Displaying 23 items

View Taxonomy