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PLM4_65_b1_redo_sep16_scaffold_5514

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_5514_1
Bacillus niacini, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(1..264)
-----------------
DNA (264bp)
protein (88aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM44671.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus niacini.;"
PLM4_65_b1_redo_sep16_scaffold_5514_2
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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377..2674
-----------------
DNA (2298bp)
protein (766aa)
Malic enzyme {ECO:0000313|EMBL:KDA53859.1}; EC=1.1.1.40 {ECO:0000313|EMBL:KDA53859.1};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
malic enzyme (EC:1.1.1.40)
Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01XW7_SOLUE
PLM4_65_b1_redo_sep16_scaffold_5514_3
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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2766..3392
-----------------
DNA (627bp)
protein (209aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA53860.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
hypothetical protein bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
curli production assembly/transport component CsgG
PLM4_65_b1_redo_sep16_scaffold_5514_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

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comp(3477..4388)
-----------------
DNA (912bp)
protein (304aa)
Cell division protein FtsX bin=GWD2_Desulfuromonadales_54_10 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Desulfuromonadales_54_10 organism_group=Deltaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM4_65_b1_redo_sep16_scaffold_5514_5
S_Thermoanaerobacterales_50_218, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(4385..5140)
-----------------
DNA (756bp)
protein (252aa)
Cell division ATP-binding protein FtsE Tax=Thermacetogenium phaeum (strain ATCC BAA-254 / DSM 12270 / PB) RepID=K4LFN2_THEPS
ftsE; cell division ATP-binding protein FtsE
Tax=S_Thermoanaerobacterales_50_218
PLM4_65_b1_redo_sep16_scaffold_5514_6
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(5177..6637)
-----------------
DNA (1461bp)
protein (487aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00222465}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LIZ0_SYNFM
gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B
PLM4_65_b1_redo_sep16_scaffold_5514_7
endosymbiont of unidentified scaly snail isolate Monju, Gammaproteobacteria, Proteobacteria, Bacteria

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6865..7407
-----------------
DNA (543bp)
protein (181aa)
Uncharacterized protein Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6CEX0_9GAMM
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="endosymbiont of unidentified scaly snail isolate Monju.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_5514_8
RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated, Acidobacteria, Bacteria

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comp(7395..8483)
-----------------
DNA (1089bp)
protein (363aa)
50S rRNA methyltransferase Tax=Acidithiobacillus thiooxidans RepID=UPI0002624A9B
ribosomal RNA large subunit methyltransferase N
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated
PLM4_65_b1_redo_sep16_scaffold_5514_9
unknown

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comp(8494..8784)
-----------------
DNA (291bp)
protein (97aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5514_10
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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8874..9884
-----------------
DNA (1011bp)
protein (337aa)
Aminoglycoside phosphotransferase Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0AC84_ALKEH
aminoglycoside phosphotransferase
Aminoglycoside phosphotransferase {ECO:0000313|EMBL:ABI55553.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
PLM4_65_b1_redo_sep16_scaffold_5514_11
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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9953..10135
-----------------
DNA (183bp)
protein (61aa)
preprotein translocase subunit TatA Tax=Thermodesulfatator atlanticus RepID=UPI0003B428D3
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_5514_12
Geomicrobium sp. JCM 19055, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(10132..10869)
-----------------
DNA (738bp)
protein (246aa)
Lytic transglycosylase Tax=Geobacillus thermodenitrificans (strain NG80-2) RepID=A4IL82_GEOTN
Soluble lytic murein transglycosylase {ECO:0000313|EMBL:GAK00959.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Geomicrobium.;" source="Geomicrobium sp. JCM 19055.;"
lytic transglycosylase
PLM4_65_b1_redo_sep16_scaffold_5514_13

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comp(10989..11270)
-----------------
DNA (282bp)
protein (94aa)
Response regulator receiver protein Tax=mine drainage metagenome RepID=E6QIM1_9ZZZZ
Response regulator receiver protein {ECO:0000313|EMBL:CBI07087.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
Fis family transcriptional regulator
PLM4_65_b1_redo_sep16_scaffold_5514_14
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(11384..12661)
-----------------
DNA (1278bp)
protein (426aa)
LysM domain protein bin=GWC2_Nitrospirae-rel_56_14 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
peptidoglycan-binding protein LysM
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_5514_15
Geobacter soli, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12817..13344)
-----------------
DNA (528bp)
protein (176aa)
TPR domain lipoprotein Tax=Geobacter sulfurreducens RepID=D7AKT4_GEOSK
Uncharacterized protein {ECO:0000313|EMBL:KIE41601.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter soli.;"
lipoprotein
Displaying 15 items

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