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PLM4_65_b1_redo_sep16_scaffold_5682

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_5682_1
unknown

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1..159
-----------------
DNA (159bp)
protein (53aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5682_2
unknown

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comp(108..746)
-----------------
DNA (639bp)
protein (213aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5682_3
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(746..1288)
-----------------
DNA (543bp)
protein (181aa)
RNA polymerase sigma-70 factor Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8C7Q0_MYXFH
RNA polymerase sigma-70 factor
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:AEI65651.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus (strain ATCC BAA-855 / HW-1).;"
PLM4_65_b1_redo_sep16_scaffold_5682_4
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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1348..2946
-----------------
DNA (1599bp)
protein (533aa)
Uncharacterized protein Tax=Sorangium cellulosum So0157-2 RepID=S4XNP7_SORCE
FG-GAP repeat protein {ECO:0000313|EMBL:AIF82779.1}; species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source="Candidatus Nitrososphaera evergladensis SR1.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_5682_5
unknown

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2981..3628
-----------------
DNA (648bp)
protein (216aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5682_6
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(3705..4202)
-----------------
DNA (498bp)
protein (166aa)
3-isopropylmalate dehydratase small subunit bin=GWA2_Ignavibacteriae_54_16_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Ignavibacteriae_54_16_partial organism_group=Ignavibacteria
3-isopropylmalate dehydratase, small subunit
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_5682_7
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(4225..5511)
-----------------
DNA (1287bp)
protein (429aa)
leuC1; 3-isopropylmalate dehydratase large subunit 1 (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit bin=GWB2_Ignavibacteria_35_12 species=Methanobacterium sp. genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWB2_Ignavibacteria_35_12 organism_group=Ignavibacteria organism_desc=Good
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_5682_8
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(5523..6722)
-----------------
DNA (1200bp)
protein (400aa)
Acyl-CoA transferase Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2MQE6_9PROT bin=16ft_combo_ws3_JS1 species=Thalassospira xiamenensis genus=Thalassospira taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
putative acyl-CoA transferase
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_5682_9
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(6742..7659)
-----------------
DNA (918bp)
protein (306aa)
hydroxymethylglutaryl-CoA lyase (EC:4.1.3.4)
Hydroxymethylglutaryl-CoA lyase bin=GWC2_Elusimicrobia_51_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWC2_Elusimicrobia_51_8 organism_group=Elusimicrobia
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_5682_10
RIFOXYC12_FULL_TA06_54_24_curated, TA06, Bacteria

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comp(7685..8749)
-----------------
DNA (1065bp)
protein (355aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] bin=TA06_GWE2_final species=TA06 genus=TA06 taxon_order=TA06 taxon_class=TA06 phylum=TA06 tax=TA06_GWE2_final organism_group=TA06
isocitrate/isopropylmalate dehydrogenase
Tax=RIFOXYC12_FULL_TA06_54_24_curated
PLM4_65_b1_redo_sep16_scaffold_5682_11
Herpetosiphon aurantiacus, Herpetosiphon, Herpetosiphonales, Chloroflexia, Chloroflexi, Bacteria

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9015..11714
-----------------
DNA (2700bp)
protein (900aa)
Lysyl endopeptidase {ECO:0000313|EMBL:ABX03140.1}; EC=3.4.21.50 {ECO:0000313|EMBL:ABX03140.1};; Flags: Precursor;; species="Bacteria; Chloroflexi; Chloroflexia; Herpetosiphonales; Herpetosiphonaceae; Herpetosiphon.;" source="Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785).;"
Lysyl endopeptidase Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9AV62_HERA2
lysyl endopeptidase
PLM4_65_b1_redo_sep16_scaffold_5682_12
unknown

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11934..12239
-----------------
DNA (306bp)
protein (102aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_5682_13
unknown

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comp(12308..13156)
-----------------
DNA (849bp)
protein (283aa)

This feature has no annotations

Displaying 13 items

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