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PLM4_65_b1_redo_sep16_scaffold_5779

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_5779_1
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(1..906)
-----------------
DNA (906bp)
protein (302aa)
Electron transfer flavoprotein, alpha subunit Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029W7_SOLUE
electron transfer flavoprotein subunit alpha
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_5779_2
RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(906..1694)
-----------------
DNA (789bp)
protein (263aa)
Electron transfer flavoprotein beta-subunit Tax=Solibacter usitatus (strain Ellin6076) RepID=Q029W6_SOLUE
electron transfer flavoprotein subunit beta
Tax=RBG_19FT_COMBO_Deltaproteobacteria_52_11_curated
PLM4_65_b1_redo_sep16_scaffold_5779_3
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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1859..2587
-----------------
DNA (729bp)
protein (243aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54307.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
MotA/TolQ/ExbB proton channel; K03562 biopolymer transport protein TolQ bin=CNBR_ACIDO species=Holophaga foetida genus=Holophaga taxon_order=Holophagales taxon_class=Holophagae phylum=Acidobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
TolQ-like biopolymer transport membrane proton channel
PLM4_65_b1_redo_sep16_scaffold_5779_4
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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2587..3027
-----------------
DNA (441bp)
protein (147aa)
Biopolymer transport membrane protein, TolR-related protein Tax=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) RepID=Q3A095_PELCD
biopolymer transport membrane TolR-like protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_5779_5
RLO_RIF05_58_11, RIF5, Bacteria

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3024..3728
-----------------
DNA (705bp)
protein (235aa)
Periplasmic protein TonB Tax=uncultured Latescibacteria bacterium RepID=Q2YZV9_9BACT
kgd; alpha-ketoglutarate decarboxylase
Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
PLM4_65_b1_redo_sep16_scaffold_5779_6
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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3742..5154
-----------------
DNA (1413bp)
protein (471aa)
tolB; protein TolB; K03641 TolB protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
translocation protein TolB
Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
PLM4_65_b1_redo_sep16_scaffold_5779_7
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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5151..5831
-----------------
DNA (681bp)
protein (227aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54242.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
OmpA/MotB domain protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidoglycan-associated (lipo)protein-like protein
PLM4_65_b1_redo_sep16_scaffold_5779_8
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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5852..6706
-----------------
DNA (855bp)
protein (285aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54241.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
putative tol-Pal system protein YbgF
PLM4_65_b1_redo_sep16_scaffold_5779_9
Rhodopirellula sallentina, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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6777..7040
-----------------
DNA (264bp)
protein (88aa)
30S ribosomal protein S20 Tax=Rhodopirellula sallentina SM41 RepID=M5U8J2_9PLAN
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sallentina SM41.;"
rpsT; 30S ribosomal protein S20
PLM4_65_b1_redo_sep16_scaffold_5779_10
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

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comp(7089..7607)
-----------------
DNA (519bp)
protein (173aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_65_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_65_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_13_OP8X_37_8_curated
PLM4_65_b1_redo_sep16_scaffold_5779_11
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(7604..10084)
-----------------
DNA (2481bp)
protein (827aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Leucine--tRNA ligase Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9R9B3_AMMDK
leucyl-tRNA synthetase
PLM4_65_b1_redo_sep16_scaffold_5779_12
uncultured Thiohalocapsa sp. PB-PSB1, Thiohalocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10081..11094)
-----------------
DNA (1014bp)
protein (338aa)
Uncharacterized protein Tax=uncultured Thiohalocapsa sp. PB-PSB1 RepID=V4J3D4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:ESQ10121.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiohalocapsa; environmental samples.;" source="uncultured Thiohalocapsa sp. PB-PSB1.;"
PLM4_65_b1_redo_sep16_scaffold_5779_13
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(11091..11576)
-----------------
DNA (486bp)
protein (162aa)
N utilization substance protein B homolog Tax=Pedosphaera parvula Ellin514 RepID=B9XNZ3_9BACT
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
nusB; transcription antitermination factor NusB
PLM4_65_b1_redo_sep16_scaffold_5779_14
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(11677..12153)
-----------------
DNA (477bp)
protein (159aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
6,7-dimethyl-8-ribityllumazine synthase Tax=Aquifex aeolicus (strain VF5) RepID=RISB_AQUAE
ribH; 6,7-dimethyl-8-ribityllumazine synthase
PLM4_65_b1_redo_sep16_scaffold_5779_15

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comp(12219..12956)
-----------------
DNA (738bp)
protein (246aa)
Short-chain dehydrogenase/reductase SDR Tax=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) RepID=A9B5F9_HERA2
Short chain dehydrogenase {ECO:0000313|EMBL:AIA15814.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
short-chain dehydrogenase/reductase SDR
Displaying 15 items

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