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PLM4_65_b1_redo_sep16_scaffold_4164

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_4164_1
Azoarcus evansii, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..343)
-----------------
DNA (342bp)
protein (114aa)
abmB; beta-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.211)
3-hydroxyacyl-CoA dehydrogenase Tax=Azoarcus toluclasticus RepID=UPI0003670BCB
Putative beta-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:AAL02072.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus evansii.;"
PLM4_65_b1_redo_sep16_scaffold_4164_2
GWF2_Lentisphaerae_50_93_curated, Lentisphaerae, Bacteria

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comp(861..1127)
-----------------
DNA (267bp)
protein (89aa)
Putative uncharacterized protein bin=GWF2_Lentisphaerae_50_93 species=Cylindrospermum stagnale genus=Cylindrospermum taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain
Tax=GWF2_Lentisphaerae_50_93_curated
PLM4_65_b1_redo_sep16_scaffold_4164_trna_2
unknown

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comp(1217..1290)
-----------------
DNA (74bp)
transferRNA Pro
PLM4_65_b1_redo_sep16_scaffold_4164_3
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1321..1779)
-----------------
DNA (459bp)
protein (153aa)
Transcriptional regulator, MerR family Tax=Desulfovibrio alkalitolerans DSM 16529 RepID=S7T2X9_9DELT
transcriptional regulator
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
PLM4_65_b1_redo_sep16_scaffold_4164_4
GWC2_Deltaproteobacteria_55_46b_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1833..3137)
-----------------
DNA (1305bp)
protein (435aa)
engA; GTP-binding protein EngA; K03977 GTP-binding protein bin=GWC2_NOV_55_46 species=Geobacter daltonii genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_NOV_55_46 organism_group=Proteobacteria
engA; GTP-binding protein Der
Tax=GWC2_Deltaproteobacteria_55_46b_curated
PLM4_65_b1_redo_sep16_scaffold_4164_trna_1
unknown

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3257..3340
-----------------
DNA (84bp)
transferRNA Leu
PLM4_65_b1_redo_sep16_scaffold_4164_5
unknown

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comp(3363..3722)
-----------------
DNA (360bp)
protein (120aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_4164_6
R_Proteobacteria_53_8, Proteobacteria, Bacteria

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comp(3766..4026)
-----------------
DNA (261bp)
protein (87aa)
Acyl carrier protein Tax=Pedosphaera parvula Ellin514 RepID=B9XGA6_9BACT
acyl carrier protein
Tax=RIFCSPLOWO2_02_FULL_Proteobacteria_53_8_curated
PLM4_65_b1_redo_sep16_scaffold_4164_7
Oceanithermus profundus, Oceanithermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(4098..4730)
-----------------
DNA (633bp)
protein (211aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:ADR36824.1}; EC=1.1.1.100 {ECO:0000313|EMBL:ADR36824.1};; species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Oceanithermus.;" source="Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 /; 506).;"
3-oxoacyl-(Acyl-carrier-protein) reductase Tax=Oceanithermus profundus (strain DSM 14977 / NBRC 100410 / VKM B-2274 / 506) RepID=E4U8Z4_OCEP5
3-oxoacyl-(acyl-carrier-protein) reductase
PLM4_65_b1_redo_sep16_scaffold_4164_8
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

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comp(4841..5776)
-----------------
DNA (936bp)
protein (312aa)
Polysaccharide deacetylase Tax=Desulfovibrio vulgaris RepID=A1VI11_DESVV
polysaccharide deacetylase family protein
Tax=RBG_16_Nitrospirae_64_22_curated
PLM4_65_b1_redo_sep16_scaffold_4164_9
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(5778..6461)
-----------------
DNA (684bp)
protein (228aa)
Glycosyltransferase Tax=planctomycete KSU-1 RepID=I3IMR0_9PLAN
Uncharacterized protein {ECO:0000313|EMBL:KDA53973.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
family 2 glycosyl transferase
PLM4_65_b1_redo_sep16_scaffold_4164_10
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6540..6926
-----------------
DNA (387bp)
protein (129aa)
NADH-quinone oxidoreductase subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01394};; NADH dehydrogenase I subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NDH-1 subunit A {ECO:0000256|HAMAP-Rule:MF_01394}; NUO1 {ECO:0000256|HAMAP-Rule:MF_01394}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter sp. JL475.;"
nuoA; NADH-quinone oxidoreductase subunit A (EC:1.6.99.5)
NADH-quinone oxidoreductase subunit A Tax=Ralstonia solanacearum (strain Po82) RepID=F6G089_RALS8
PLM4_65_b1_redo_sep16_scaffold_4164_11
Desulfurispirillum indicum, Desulfurispirillum, Chrysiogenales, Chrysiogenetes, Chrysiogenetes, Bacteria

Not on your lists

6927..7436
-----------------
DNA (510bp)
protein (170aa)
NADH-quinone oxidoreductase, E subunit Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W2P3_DESIS
NADH-quinone oxidoreductase subunit E
NADH-quinone oxidoreductase, E subunit {ECO:0000313|EMBL:ADU65627.1}; species="Bacteria; Chrysiogenetes; Chrysiogenales; Chrysiogenaceae; Desulfurispirillum.;" source="Desulfurispirillum indicum (strain ATCC BAA-1389 / S5).;"
PLM4_65_b1_redo_sep16_scaffold_4164_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7439..8737
-----------------
DNA (1299bp)
protein (433aa)
NADH dehydrogenase subunit F (EC:1.6.99.5)
NADH-quinone oxidoreductase, F subunit Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VT00_RHILT
NADH-quinone oxidoreductase, F subunit {ECO:0000313|EMBL:EJC75928.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
PLM4_65_b1_redo_sep16_scaffold_4164_13
R_WOR_2_68_15, WOR-2, Bacteria

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8737..10377
-----------------
DNA (1641bp)
protein (547aa)
NADH dehydrogenase I subunit G bin=GWD2_Deltaproteobacteria_55_8 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
NADH dehydrogenase subunit G
Tax=RIFCSPHIGHO2_02_FULL_WOR_2_68_15_curated
PLM4_65_b1_redo_sep16_scaffold_4164_14
RLO_RIF02_62_27, RIF2, Bacteria

Not on your lists

10374..11471
-----------------
DNA (1098bp)
protein (366aa)
hypothetical protein Tax=Bacteria RepID=UPI00036C3B06
NADH dehydrogenase subunit H
Tax=RIFCSPLOWO2_12_FULL_RIF02_62_27_curated
PLM4_65_b1_redo_sep16_scaffold_4164_15
BJP_IG2158_Zixibacteria_48_33, Zixibacteria, Bacteria

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11474..12013
-----------------
DNA (540bp)
protein (180aa)
hypothetical protein Tax=Verrucomicrobium sp. 3C RepID=UPI00037AAFEC
NADH-ubiquinone/plastoquinone oxidoreductase chain 6
Tax=BJP_IG2158_Zixibacteria_48_33
PLM4_65_b1_redo_sep16_scaffold_4164_16
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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12010..12315
-----------------
DNA (306bp)
protein (102aa)
nuoK; NADH dehydrogenase I subunit K; K00340 NADH-quinone oxidoreductase subunit K [EC:1.6.5.3] bin=BACIGN_2 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=BACIGN_2 organism_group=Unknown_CP
NADH-ubiquinone oxidoreductase chain 4L
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_4164_17
GWA2_RIF03_38_11_curated, RIF3, Bacteria

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12320..14257
-----------------
DNA (1938bp)
protein (646aa)
NADH dehydrogenase I subunit L Tax=uncultured prokaryote RepID=H5SP78_9ZZZZ
proton-translocating NADH-quinone oxidoreductase subunit L
Tax=GWA2_RIF03_38_11_curated
PLM4_65_b1_redo_sep16_scaffold_4164_18
RBG_16_Deltaproteobacteria_54_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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14257..15450
-----------------
DNA (1194bp)
protein (398aa)
Proton-translocating NADH-quinone oxidoreductase, chain M bin=GWC2_Elusimicrobia_64_44 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Elusimicrobia_64_44 organism_group=Elusimicrobia organism_desc=Good
proton-translocating NADH-quinone oxidoreductase subunit M
Tax=RBG_16_Deltaproteobacteria_54_11_curated
Displaying 20 items

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