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PLM4_65_b1_redo_sep16_scaffold_1957

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_1957_1

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2..148
-----------------
DNA (147bp)
protein (49aa)
Putative uncharacterized protein Tax=uncultured marine microorganism HF4000_009L19 RepID=B3T1G8_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ABZ06427.1}; species="unclassified sequences; environmental samples.;" source="uncultured marine microorganism HF4000_009L19.;"
PLM4_65_b1_redo_sep16_scaffold_1957_2
R_Gamma2_65_16, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(161..1321)
-----------------
DNA (1161bp)
protein (387aa)
Uncharacterized protein Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVB5_THIA3
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Gamma2_65_16_curated
PLM4_65_b1_redo_sep16_scaffold_1957_3
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(1440..3977)
-----------------
DNA (2538bp)
protein (846aa)
Putative secreted protein Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UWT6_PSEUP
Predicted extracellular nuclease {ECO:0000313|EMBL:CDM66368.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
putative secreted protein
PLM4_65_b1_redo_sep16_scaffold_1957_4
delta proteobacterium NaphS2, Deltaproteobacteria, Proteobacteria, Bacteria

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4117..5160
-----------------
DNA (1044bp)
protein (348aa)
PAP2 family protein Tax=delta proteobacterium NaphS2 RepID=D8F7C0_9DELT
PAP2 family protein {ECO:0000313|EMBL:EFK08352.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium NaphS2.;"
phosphoesterase PA-phosphatase-like protein
PLM4_65_b1_redo_sep16_scaffold_1957_5
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

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5366..6616
-----------------
DNA (1251bp)
protein (417aa)
Sodium/sulphate symporter bin=GWC2_Deltaproteobacteria_42_51 species=Mariprofundus ferrooxydans genus=Mariprofundus taxon_order=Mariprofundales taxon_class=Zetaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
Tax=RBG_13_OP8X_37_8_curated
PLM4_65_b1_redo_sep16_scaffold_1957_6
RLO_PLX_64_10, Bacteria

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comp(6630..8114)
-----------------
DNA (1485bp)
protein (495aa)
Putative sodium:sulfate symporter Tax=Sorangium cellulosum (strain So ce56) RepID=A9G1E7_SORC5
sodium:sulfate symporter
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM4_65_b1_redo_sep16_scaffold_1957_7
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8151..8732)
-----------------
DNA (582bp)
protein (194aa)
Regulatory protein, FmdB family Tax=Thiocapsa marina 5811 RepID=F9UF71_9GAMM
Regulatory protein, FmdB family {ECO:0000313|EMBL:EGV17108.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
CxxC_CxxC_SSSS superfamily protein
PLM4_65_b1_redo_sep16_scaffold_1957_8

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8972..11236
-----------------
DNA (2265bp)
protein (755aa)
hypothetical protein Tax=Aminicenantes bacterium SCGC AAA255-E10 RepID=UPI0003826A6D
Uncharacterized protein {ECO:0000313|EMBL:KKN25791.1}; species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
membrane associated hydrolase
PLM4_65_b1_redo_sep16_scaffold_1957_9
BJP_IG2157_Desulfuromonadales_56_134, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11444..11854)
-----------------
DNA (411bp)
protein (137aa)
Nucleotide binding protein PINc bin=GWC2_Methylomirabilis_70_16 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=BJP_IG2157_Desulfuromonadales_56_134
PLM4_65_b1_redo_sep16_scaffold_1957_10
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(11851..12114)
-----------------
DNA (264bp)
protein (88aa)
Putative uncharacterized protein bin=GWF2_Planctomycete_41_51 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
hypothetical protein
Tax=RBG_16_Deltaproteobacteria_49_23_curated
PLM4_65_b1_redo_sep16_scaffold_1957_11
CG_Anaero_03, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

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12173..13429
-----------------
DNA (1257bp)
protein (419aa)
hypothetical protein
Putative uncharacterized protein bin=GWC2_Chloroflexi_49_37 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_49_37 organism_group=Chloroflexi organism_desc=Good +; Candidate for curation
Tax=CG_Anaero_03
PLM4_65_b1_redo_sep16_scaffold_1957_12
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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13519..15309
-----------------
DNA (1791bp)
protein (597aa)
Uncharacterized protein Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MEU9_RHOM4
hypothetical protein
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_1957_13
Alkalilimnicola ehrlichii, Alkalilimnicola, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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15315..16454
-----------------
DNA (1140bp)
protein (380aa)
ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (EC:4.1.1.39)
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit {ECO:0000313|EMBL:ABI56517.1}; EC=4.1.1.39 {ECO:0000313|EMBL:ABI56517.1};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola.;" source="Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1).;"
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0A9H0_ALKEH
PLM4_65_b1_redo_sep16_scaffold_1957_14
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

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16451..16864
-----------------
DNA (414bp)
protein (138aa)
Uncharacterized protein Tax=Nitrococcus mobilis Nb-231 RepID=A4BMZ5_9GAMM
cupin
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_1957_15
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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16876..17685
-----------------
DNA (810bp)
protein (270aa)
hypothetical protein bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_1957_16
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

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comp(17727..18620)
-----------------
DNA (894bp)
protein (298aa)
hypothetical protein Tax=Acidobacteriaceae bacterium TAA166 RepID=UPI0003B5E3FD
Tax=RBG_16_Gemmatimonadetes_66_8_curated
PLM4_65_b1_redo_sep16_scaffold_1957_17
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(18617..19942)
-----------------
DNA (1326bp)
protein (442aa)
Putative uncharacterized protein Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01QB4_SOLUE
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_1957_18
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(19954..20766)
-----------------
DNA (813bp)
protein (271aa)
id=12557812 bin=CNBR_ACIDO tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_1957_19
RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated, Acidobacteria, Bacteria

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comp(20750..21373)
-----------------
DNA (624bp)
protein (208aa)
RNA polymerase, sigma-24 subunit, ECF subfamily Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01QB2_SOLUE
ECF subfamily RNA polymerase sigma-24 factor
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated
PLM4_65_b1_redo_sep16_scaffold_1957_20
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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21654..22619
-----------------
DNA (966bp)
protein (322aa)
Uncharacterized protein Tax=Ilumatobacter coccineus YM16-304 RepID=M5AJS3_9ACTN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EYT60136.1}; species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
Displaying 20 items

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