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PLM4_65_b1_redo_sep16_scaffold_6954

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_6954_1
Actinoplanes friuliensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

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comp(2..550)
-----------------
DNA (549bp)
protein (183aa)
Uncharacterized protein Tax=Actinoplanes friuliensis DSM 7358 RepID=U5VZ96_9ACTO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGZ42313.1}; species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes friuliensis DSM 7358.;"
PLM4_65_b1_redo_sep16_scaffold_6954_2
unknown

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comp(648..1085)
-----------------
DNA (438bp)
protein (146aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_6954_3
unknown

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1415..1813
-----------------
DNA (399bp)
protein (133aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_6954_4
RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated, Acidobacteria, Bacteria

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1881..2147
-----------------
DNA (267bp)
protein (89aa)
histone-like DNA-binding protein; K03530 DNA-binding protein HU-beta bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hupA2; DNA-binding protein HU 1
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_66_10_curated
PLM4_65_b1_redo_sep16_scaffold_6954_5
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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2263..3171
-----------------
DNA (909bp)
protein (303aa)
hypothetical protein Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00036DD826
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_6954_6
Paenibacillus macerans, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(3182..3670)
-----------------
DNA (489bp)
protein (163aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus macerans (Bacillus macerans).;"
dtd; D-tyrosyl-tRNA(Tyr) deacylase (EC:3.1.-.-)
D-tyrosyl-tRNA(Tyr) deacylase Tax=Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) RepID=E8N3F9_ANATU
PLM4_65_b1_redo_sep16_scaffold_6954_7
Acidithiobacillus ferrivorans, Acidithiobacillus, Acidithiobacillales, Gammaproteobacteria, Proteobacteria, Bacteria

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3759..4205
-----------------
DNA (447bp)
protein (149aa)
Single-stranded DNA-binding protein Tax=Acidithiobacillus ferrivorans SS3 RepID=G0JS21_9GAMM
single-strand binding protein
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; species="Bacteria; Proteobacteria; Gammaproteobacteria; Acidithiobacillales; Acidithiobacillaceae; Acidithiobacillus.;" source="Acidithiobacillus ferrivorans SS3.;"
PLM4_65_b1_redo_sep16_scaffold_6954_8
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

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comp(4202..5254)
-----------------
DNA (1053bp)
protein (351aa)
beta-glucosidase-related glycosidase (EC:3.2.1.52)
hypothetical protein Tax=Verrucomicrobium sp. 3C RepID=UPI0003618635
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM4_65_b1_redo_sep16_scaffold_6954_9
RBG_16_Aminicenantes_66_30_curated, Aminicenantes, Bacteria

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comp(5251..7857)
-----------------
DNA (2607bp)
protein (869aa)
DNA mismatch repair protein MutS; K03555 DNA mismatch repair protein MutS bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
DNA mismatch repair protein MutS
Tax=RBG_16_Aminicenantes_66_30_curated
PLM4_65_b1_redo_sep16_scaffold_6954_10
Thermaerobacter subterraneus, Thermaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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7907..8584
-----------------
DNA (678bp)
protein (226aa)
Universal bacterial protein YeaZ Tax=Thermaerobacter subterraneus DSM 13965 RepID=K6Q0X7_9FIRM
Universal bacterial protein YeaZ {ECO:0000313|EMBL:EKP94564.1}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XVII. Incertae Sedis; Thermaerobacter.;" source="Thermaerobacter subterraneus DSM 13965.;"
universal protein YeaZ
PLM4_65_b1_redo_sep16_scaffold_6954_11
Thermobispora bispora, Thermobispora, Actinobacteria, Actinobacteria, Bacteria

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8581..9087
-----------------
DNA (507bp)
protein (169aa)
Ribosomal-protein-alanine acetyltransferase Tax=Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 / JCM 10125 / NBRC 14880 / R51) RepID=D6Y567_THEBD
ribosomal-protein-alanine acetyltransferase
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:ADG87342.1}; species="Bacteria; Actinobacteria; Actinobacteria incertae sedis; Thermobispora.;" source="Thermobispora bispora (strain ATCC 19993 / DSM 43833 / CBS 139.67 /; JCM 10125 / NBRC 14880 / R51).;"
PLM4_65_b1_redo_sep16_scaffold_6954_12
RBG_19FT_COMBO_Aminicenantes_58_17_curated, Aminicenantes, Bacteria

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9166..9399
-----------------
DNA (234bp)
protein (78aa)
hypothetical protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Tax=RBG_19FT_COMBO_Aminicenantes_58_17_curated
PLM4_65_b1_redo_sep16_scaffold_6954_13
Symbiobacterium thermophilum, Symbiobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9443..10108
-----------------
DNA (666bp)
protein (222aa)
phosphatidylserine decarboxylase (EC:4.1.1.65)
Phosphatidylserine decarboxylase proenzyme {ECO:0000255|HAMAP-Rule:MF_00664}; EC=4.1.1.65 {ECO:0000255|HAMAP-Rule:MF_00664};; Contains:; Phosphatidylserine decarboxylase alpha chain {ECO:0000255|HAMAP-Rule:MF_00664}; Contains:; Phosphatidylserine decarboxylase beta chain {ECO:0000255|HAMAP-Rule:MF_00664}; species="Bacteria; Firmicutes; Clostridia; Clostridiales; Symbiobacteriaceae; Symbiobacterium.;" source="Symbiobacterium thermophilum (strain T / IAM 14863).;"
Phosphatidylserine decarboxylase proenzyme Tax=Symbiobacterium thermophilum (strain T / IAM 14863) RepID=PSD_SYMTH
PLM4_65_b1_redo_sep16_scaffold_6954_14
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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10105..10893
-----------------
DNA (789bp)
protein (263aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA53681.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
CDP-diacylglycerol/serine O-phosphatidyltransferase bin=GWC2_Methylomirabilis_70_16 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
pssA; phosphatidylserine synthase
PLM4_65_b1_redo_sep16_scaffold_6954_15
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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11067..12023
-----------------
DNA (957bp)
protein (319aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Thioredoxin reductase Tax=Ignavibacterium album (strain DSM 19864 / JCM 16511 / NBRC 101810 / Mat9-16) RepID=I0ALW2_IGNAJ bin=16ft_combo_ws3_JS1 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
NADPH-dependent thioredoxin reductase
PLM4_65_b1_redo_sep16_scaffold_6954_16
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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12020..13021
-----------------
DNA (1002bp)
protein (334aa)
magnesium protoporphyrin chelatase
Magnesium protoporphyrin chelatase, putative bin=GWA2_Ignavibacteria_55_11 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
Tax=RBG_13_Acidobacteria_68_16_curated
Displaying 16 items

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