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PLM4_65_b1_redo_sep16_scaffold_6992

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_6992_trna_1
unknown

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comp(136..208)
-----------------
DNA (73bp)
transferRNA Glu
PLM4_65_b1_redo_sep16_scaffold_6992_1
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(306..698)
-----------------
DNA (393bp)
protein (131aa)
Short-chain dehydrogenase/reductase SDR Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ASU5_RUBXD
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABG05533.1}; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
PLM4_65_b1_redo_sep16_scaffold_6992_2
RBG_13_OP8X_37_8_curated, OP8X, Bacteria

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780..2336
-----------------
DNA (1557bp)
protein (519aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28) bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
Tax=RBG_13_OP8X_37_8_curated
PLM4_65_b1_redo_sep16_scaffold_6992_3
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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2595..2855
-----------------
DNA (261bp)
protein (87aa)
hypothetical protein Tax=Aminicenantes RepID=UPI0003741A2A
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_6992_4
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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2852..3706
-----------------
DNA (855bp)
protein (285aa)
glutamate racemase (EC:5.1.1.3)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
Glutamate racemase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LEZ2_CHLTF
PLM4_65_b1_redo_sep16_scaffold_6992_5
Moorella glycerini, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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3710..4531
-----------------
DNA (822bp)
protein (274aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella glycerini.;"
ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LE15_CHLTF
PLM4_65_b1_redo_sep16_scaffold_6992_6
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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comp(4592..5722)
-----------------
DNA (1131bp)
protein (377aa)
Putative uncharacterized protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G6Y7_GEOUR
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_6992_7
GWA2_Deltaproteobacteria_65_63_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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5888..7252
-----------------
DNA (1365bp)
protein (455aa)
UDP-N-acetylmuramate bin=GWB2_Deltaproteobacteria_65_81 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Deltaproteobacteria_65_81 organism_group=Deltaproteobacteria organism_desc=Good +
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diamino pimelate ligase
Tax=GWA2_Deltaproteobacteria_65_63_curated
PLM4_65_b1_redo_sep16_scaffold_6992_8
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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7362..9551
-----------------
DNA (2190bp)
protein (730aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA53355.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
PLM4_65_b1_redo_sep16_scaffold_6992_9
unknown

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9548..10264
-----------------
DNA (717bp)
protein (239aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_6992_10
unknown

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comp(10228..10905)
-----------------
DNA (678bp)
protein (226aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_6992_11
GWB2_Desulfobacterales_56_26_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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11042..12277
-----------------
DNA (1236bp)
protein (412aa)
hypothetical protein Tax=Aminicenantes bacterium SCGC AAA252-F08 RepID=UPI0003B34AB6
hypothetical protein
Tax=GWB2_Desulfobacterales_56_26_curated
PLM4_65_b1_redo_sep16_scaffold_6992_12
BJP_IG2102_Syntrophobacterales_60_12, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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12342..13604
-----------------
DNA (1263bp)
protein (421aa)
ATPase bin=GWC2_Proteo_65_14_Ab886 species=Thermus thermophilus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
putative GTP-binding protein
Tax=BJP_IG2102_Syntrophobacterales_60_12
PLM4_65_b1_redo_sep16_scaffold_6992_13
CG_Delta_07, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13664..14236)
-----------------
DNA (573bp)
protein (191aa)
Adenosine deaminase bin=GWB1_Spirochaetes_59_5 species=unknown genus=Alishewanella taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB1_Spirochaetes_59_5 organism_group=Spirochaetes
adenosine deaminase
Tax=CG_Delta_07
Displaying 14 items

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