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PLM4_65_b1_redo_sep16_scaffold_2017

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2017_1
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(2..1840)
-----------------
DNA (1839bp)
protein (613aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA54846.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
Putative uncharacterized protein bin=GWC2_Deltaproteobacteria_55_46 species=Candidatus Kuenenia stuttgartiensis genus=Candidatus Kuenenia taxon_order=Candidatus Brocadiales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
RND transporter
PLM4_65_b1_redo_sep16_scaffold_2017_2
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(1837..2427)
-----------------
DNA (591bp)
protein (197aa)
CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase Tax=Clostridium ultunense Esp RepID=M1ZHZ6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KDA54845.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
pgsA; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
PLM4_65_b1_redo_sep16_scaffold_2017_3

Not on your lists

comp(2462..3088)
-----------------
DNA (627bp)
protein (209aa)
lytic transglycosylase, catalytic, putative bin=ACD20 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=ACD20 organism_group=Novel_Cyano/Firm organism_desc=Novel_Cyano/Firm
Uncharacterized protein {ECO:0000313|EMBL:EKE03831.1}; species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
lytic transglycosylase domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_2017_4
Desulfarculus baarsii, Desulfarculus, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3091..5862)
-----------------
DNA (2772bp)
protein (924aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfarculales; Desulfarculaceae; Desulfarculus.;" source="Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 /; 2st14).;"
Alanine--tRNA ligase Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QIT5_DESB2
alanyl-tRNA synthetase
PLM4_65_b1_redo_sep16_scaffold_2017_5
Isoptericola variabilis, Isoptericola, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5905..6348)
-----------------
DNA (444bp)
protein (148aa)
Regulatory protein RecX Tax=Isoptericola variabilis (strain 225) RepID=F6FSE9_ISOV2
Regulatory protein recX
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; species="Bacteria; Actinobacteria; Micrococcales; Promicromonosporaceae; Isoptericola.;" source="Isoptericola variabilis (strain 225).;"
PLM4_65_b1_redo_sep16_scaffold_2017_6
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6435..7526)
-----------------
DNA (1092bp)
protein (364aa)
Uncharacterized protein Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UEJ5_MYXSD
Uncharacterized protein {ECO:0000313|EMBL:KFA91410.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2017_7
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(7583..8767)
-----------------
DNA (1185bp)
protein (395aa)
Twitching motility protein Tax=Holophaga foetida DSM 6591 RepID=H1NZI1_9BACT
Twitching motility protein PilT {ECO:0000313|EMBL:KDA54384.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
pilus retraction protein PilT
PLM4_65_b1_redo_sep16_scaffold_2017_8
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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comp(8793..9746)
-----------------
DNA (954bp)
protein (318aa)
branched-chain amino acid aminotransferase Tax=Aminicenantes bacterium SCGC AAA252-F08 RepID=UPI0003B7AF35
branched-chain amino acid aminotransferase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM4_65_b1_redo_sep16_scaffold_2017_9
RIFOXYA2_FULL_Elusimicrobia_47_53_curated, Elusimicrobia, Bacteria

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comp(9801..10514)
-----------------
DNA (714bp)
protein (238aa)
Ribosomal RNA small subunit methyltransferase E Tax=Ammonifex degensii (strain DSM 10501 / KC4) RepID=C9RBY1_AMMDK
hypothetical protein
Tax=RIFOXYA2_FULL_Elusimicrobia_47_53_curated
PLM4_65_b1_redo_sep16_scaffold_2017_10
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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comp(10511..11497)
-----------------
DNA (987bp)
protein (329aa)
prmA; 50S ribosomal protein L11 methyltransferase (EC:2.1.1.-); K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-] bin=bin5_DeltaP species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin5_DeltaP organism_group=Deltaproteobacteria
prmA; ribosomal protein L11 methyltransferase (EC:2.1.1.-)
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_2017_11
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

comp(11494..12630)
-----------------
DNA (1137bp)
protein (379aa)
Chaperone protein DnaJ Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJ62_CHLTF
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
molecular chaperone DnaJ
PLM4_65_b1_redo_sep16_scaffold_2017_12
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

comp(12634..14496)
-----------------
DNA (1863bp)
protein (621aa)
Chaperone protein DnaK Tax=Syntrophus aciditrophicus (strain SB) RepID=DNAK_SYNAS
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
dnaK; molecular chaperone DnaK
PLM4_65_b1_redo_sep16_scaffold_2017_13
Thermobacillus composti, Thermobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14526..15185)
-----------------
DNA (660bp)
protein (220aa)
Protein GrpE Tax=Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4) RepID=L0EFC3_THECK
molecular chaperone GrpE
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Thermobacillus.;" source="Thermobacillus composti (strain DSM 18247 / JCM 13945 / KWC4).;"
PLM4_65_b1_redo_sep16_scaffold_2017_14
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15202..16272)
-----------------
DNA (1071bp)
protein (357aa)
Heat-inducible transcription repressor hrcA bin=GWC2_Geobacteraceae_55_20 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Geobacteraceae_55_20 organism_group=Deltaproteobacteria
heat-inducible transcription repressor HrcA
Tax=GWC2_Geobacteraceae_55_20_curated
PLM4_65_b1_redo_sep16_scaffold_2017_15
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

16353..17297
-----------------
DNA (945bp)
protein (315aa)
Uncharacterized protein Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SFQ7_RHOMR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN72227.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
PLM4_65_b1_redo_sep16_scaffold_2017_16
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

Not on your lists

17302..18606
-----------------
DNA (1305bp)
protein (435aa)
Uncharacterized protein Tax=Holophaga foetida DSM 6591 RepID=H1P486_9BACT
Uncharacterized protein {ECO:0000313|EMBL:KDA54044.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
GTPase-like protein
PLM4_65_b1_redo_sep16_scaffold_2017_17
RBG_13_Aminicenantes_59_9_curated, Aminicenantes, Bacteria

Not on your lists

18665..19129
-----------------
DNA (465bp)
protein (155aa)
Transcriptional repressor NrdR Tax=uncultured Acidobacteria bacterium RepID=H5SFE3_9BACT
nrdR; transcriptional regulator NrdR
Tax=RBG_13_Aminicenantes_59_9_curated
PLM4_65_b1_redo_sep16_scaffold_2017_18
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

19126..21597
-----------------
DNA (2472bp)
protein (824aa)
lon; ATP-dependent protease La (EC:3.4.21.53); K01338 ATP-dependent Lon protease [EC:3.4.21.53] bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
lon; ATP-dependent protease La (EC:3.4.21.53)
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_2017_19
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21594..22280
-----------------
DNA (687bp)
protein (229aa)
thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-phosphate kinase (Fragment) Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6XQ64_9RHOO
Thiamine-phosphate kinase {ECO:0000313|EMBL:ENO83826.1}; Flags: Fragment;; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
Displaying 19 items

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