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PLM4_65_b1_redo_sep16_scaffold_2409

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2409_1
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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2..1573
-----------------
DNA (1572bp)
protein (524aa)
Putative ABC transporter ATP-binding/permease protein Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1AE60_GEMAT bin=16ft_combo_ws3_JS1 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter transmembrane region
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_2409_2
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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1618..2841
-----------------
DNA (1224bp)
protein (408aa)
Uncharacterized protein Tax=Leishmania major RepID=E9AEK6_LEIMA
glycosyl transferase family 51
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
PLM4_65_b1_redo_sep16_scaffold_2409_3
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(2846..4843)
-----------------
DNA (1998bp)
protein (666aa)
molybdopterin oxidoreductase bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
molybdopterin oxidoreductase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_2409_4
RBG_16_Gamma2_60_9_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4840..5658)
-----------------
DNA (819bp)
protein (273aa)
Oxidoreductase, short chain dehydrogenase bin=GWC2_Proteo_65_14_Ab886 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
short chain dehydrogenase
Tax=RBG_16_Gamma2_60_9_curated
PLM4_65_b1_redo_sep16_scaffold_2409_5
unknown

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comp(5745..6017)
-----------------
DNA (273bp)
protein (91aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2409_6
RBG_16_Spirochaetes_49_21_curated, Spirochaetes, Bacteria

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6101..10198
-----------------
DNA (4098bp)
protein (1366aa)
lhr; Lhr-like helicase (EC:3.6.1.-)
Lhr-like helicase Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SEQ3_HAHCH
Tax=RBG_16_Spirochaetes_49_21_curated
PLM4_65_b1_redo_sep16_scaffold_2409_7
RIFOXYC12_FULL_Lentisphaerae_60_16_curated, Lentisphaerae, Bacteria

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10302..10823
-----------------
DNA (522bp)
protein (174aa)
id=4014705 bin=GWF2_Lentisphaerae_57_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
Tax=RIFOXYC12_FULL_Lentisphaerae_60_16_curated
PLM4_65_b1_redo_sep16_scaffold_2409_8
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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10841..11269
-----------------
DNA (429bp)
protein (143aa)
Peroxiredoxin osmC Tax=Azospirillum brasilense Sp245 RepID=G8AVI0_AZOBR
osmC; peroxiredoxin osmC
Peroxiredoxin {ECO:0000313|EMBL:AIB15203.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM4_65_b1_redo_sep16_scaffold_2409_9
unknown

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11271..11780
-----------------
DNA (510bp)
protein (170aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2409_10
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(11793..14987)
-----------------
DNA (3195bp)
protein (1065aa)
Uncharacterized protein Tax=Alistipes sp. CAG:29 RepID=R6XNI5_9BACT
alpha-mannosidase
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_2409_11
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15066..16469
-----------------
DNA (1404bp)
protein (468aa)
TPR repeat-containing protein Tax=Burkholderia sp. H160 RepID=B5WGP0_9BURK
hypothetical protein
TPR repeat-containing protein {ECO:0000313|EMBL:EEA02519.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
PLM4_65_b1_redo_sep16_scaffold_2409_12
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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16487..18160
-----------------
DNA (1674bp)
protein (558aa)
mviN; integral membrane protein MviN
mviN; integral membrane protein MviN; K03980 virulence factor bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Integral membrane protein MviN {ECO:0000313|EMBL:CBH23497.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (strain M8).;"
PLM4_65_b1_redo_sep16_scaffold_2409_13
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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18157..19284
-----------------
DNA (1128bp)
protein (376aa)
Tetratricopeptide TPR_2 repeat-containing protein Tax=Stenotrophomonas maltophilia JV3 RepID=G0JYB6_STEMA
Uncharacterized protein {ECO:0000313|EMBL:KDA54344.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_2409_14
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(19275..19784)
-----------------
DNA (510bp)
protein (170aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1ADV2_GEMAT
RNA methyltransferase
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_2409_15
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

19844..20947
-----------------
DNA (1104bp)
protein (368aa)
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
RND family efflux transporter MFP subunit
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_2409_16
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

20952..22187
-----------------
DNA (1236bp)
protein (412aa)
hypothetical protein; K02004 putative ABC transport system permease protein bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_2409_17
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

22190..23446
-----------------
DNA (1257bp)
protein (419aa)
Uncharacterized protein Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MIM1_RHOM4
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_2409_18
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

23458..24204
-----------------
DNA (747bp)
protein (249aa)
ABC transporter related protein Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=A4XM89_CALS8
ABC transporter
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_2409_19
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

24206..24619
-----------------
DNA (414bp)
protein (138aa)
hypothetical protein
hypothetical protein bin=bin9_gal15 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin9_gal15 organism_group=GAL15
Uncharacterized protein {ECO:0000313|EMBL:ADB51886.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM4_65_b1_redo_sep16_scaffold_2409_20
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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comp(24807..25895)
-----------------
DNA (1089bp)
protein (363aa)
hypothetical protein bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
hypothetical protein
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_2409_21
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

Not on your lists

comp(25896..26423)
-----------------
DNA (528bp)
protein (176aa)
magnesium protoporphyrin chelatase; K03405 magnesium chelatase subunit I [EC:6.6.1.1] bin=BACIGN_2 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=BACIGN_2 organism_group=Unknown_CP
mg-chelatase subunit chli-like protein
Tax=RBG_13_Acidobacteria_68_16_curated
Displaying 21 items

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