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PLM4_65_b1_redo_sep16_scaffold_2424

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2424_1
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

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comp(2..853)
-----------------
DNA (852bp)
protein (284aa)
PpiC-type peptidyl-prolyl cis-trans isomerase Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y7J4_LEPCP
PpiC-type peptidyl-prolyl cis-trans isomerase
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
PLM4_65_b1_redo_sep16_scaffold_2424_2
RLO_RIF05_58_11, RIF5, Bacteria

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comp(850..2877)
-----------------
DNA (2028bp)
protein (676aa)
sulfatase bin=RBG_16_Aminicenantes_63_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_63_14 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
sulfatase
Tax=RIFCSPLOWO2_12_FULL_RIF05_58_11_curated
PLM4_65_b1_redo_sep16_scaffold_2424_3
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(2874..4439)
-----------------
DNA (1566bp)
protein (522aa)
Chaperone SurA {ECO:0000256|SAAS:SAAS00043023}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
PpiC-type peptidyl-prolyl cis-trans isomerase Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HIW3_ANADF
PpiC-type peptidyl-prolyl cis-trans isomerase
PLM4_65_b1_redo_sep16_scaffold_2424_4
unknown

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comp(4536..5312)
-----------------
DNA (777bp)
protein (259aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2424_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5454..8288
-----------------
DNA (2835bp)
protein (945aa)
Spermidine synthase {ECO:0000313|EMBL:GAO55814.1}; EC=2.5.1.16 {ECO:0000313|EMBL:GAO55814.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin9_gal15 organism_group=GAL15
Spermine synthase
PLM4_65_b1_redo_sep16_scaffold_2424_6
unknown

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8372..8962
-----------------
DNA (591bp)
protein (197aa)
peptidase S8 and S53 subtilisin kexin sedolisin
PLM4_65_b1_redo_sep16_scaffold_2424_7
unknown

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8965..10515
-----------------
DNA (1551bp)
protein (517aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2424_8
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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10512..13886
-----------------
DNA (3375bp)
protein (1125aa)
ASPIC/UnbV domain protein Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LIQ2_SYNFM
ASPIC/UnbV domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_2424_9
Mycobacterium xenopi, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(13899..16157)
-----------------
DNA (2259bp)
protein (753aa)
Isocitrate lyase Tax=Mycobacterium xenopi RIVM700367 RepID=I0RW19_MYCXE
Isocitrate lyase {ECO:0000313|EMBL:EID15322.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium xenopi RIVM700367.;"
isocitrate lyase
PLM4_65_b1_redo_sep16_scaffold_2424_10
R_Acidobacteria_68_18, Acidobacteria, Bacteria

Not on your lists

comp(16154..18091)
-----------------
DNA (1938bp)
protein (646aa)
Malate synthase (EC:2.3.3.9)
Malate synthase Tax=Desulfobulbus propionicus (strain ATCC 33891 / DSM 2032 / 1pr3) RepID=E8RHN6_DESPD
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_68_18_curated
PLM4_65_b1_redo_sep16_scaffold_2424_11
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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comp(18210..18938)
-----------------
DNA (729bp)
protein (243aa)
CRP/FNR family transcriptional regulator bin=CNBR_ACIDO species=Desulfobacter postgatei genus=Desulfobacter taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Crp/FNR family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_2424_12
R_Acidobacteria_61_28, Acidobacteria, Bacteria

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19043..19810
-----------------
DNA (768bp)
protein (256aa)
Iron-sulfur cluster repair di-iron protein Tax=Chthonomonas calidirosea T49 RepID=S0ESM6_9BACT
iron-sulfur cluster repair di-iron protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
PLM4_65_b1_redo_sep16_scaffold_2424_13
Methyloglobulus morosus, Methyloglobulus, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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20118..21770
-----------------
DNA (1653bp)
protein (551aa)
Extracellular nuclease Tax=Methyloglobulus morosus KoM1 RepID=V5DVL9_9GAMM
Extracellular nuclease {ECO:0000313|EMBL:ESS71426.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloglobulus.;" source="Methyloglobulus morosus KoM1.;"
putative extracellular nuclease
Displaying 13 items

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