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PLM4_65_b1_redo_sep16_scaffold_2724

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_2724_1
unknown

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comp(1..1632)
-----------------
DNA (1632bp)
protein (544aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2724_2
Marinomonas sp. MWYL1, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1640..1987)
-----------------
DNA (348bp)
protein (116aa)
Histidine triad (HIT) protein Tax=Marinomonas sp. (strain MWYL1) RepID=A6VZM3_MARMS
histidine triad (HIT) protein
Histidine triad (HIT) protein {ECO:0000313|EMBL:ABR71902.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas sp. (strain MWYL1).;"
PLM4_65_b1_redo_sep16_scaffold_2724_3
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2001..3272)
-----------------
DNA (1272bp)
protein (424aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase Tax=Methyloversatilis universalis FAM5 RepID=F5RDQ9_9RHOO
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
PLM4_65_b1_redo_sep16_scaffold_2724_4
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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comp(3300..4148)
-----------------
DNA (849bp)
protein (283aa)
protoporphyrinogen oxidase; K02493 release factor glutamine methyltransferase [EC:2.1.1.-] bin=bin9_gal15 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin9_gal15 organism_group=GAL15
protein-(glutamine-N5) methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
PLM4_65_b1_redo_sep16_scaffold_2724_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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4277..4762
-----------------
DNA (486bp)
protein (162aa)
Transcriptional regulator Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DB10_SINAD
transcriptional regulator
Tax=GWC2_Gemmatimonadetes_71_10_curated
PLM4_65_b1_redo_sep16_scaffold_2724_6
Paenibacillus sp. FSL H7-0357, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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4759..5709
-----------------
DNA (951bp)
protein (317aa)
hypothetical protein GobsU_12882 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DDE bin=16ft_combo_ws3_JS1 species=Gemmata obscuriglobus genus=Gemmata taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
multidrug transporter
Multidrug transporter {ECO:0000313|EMBL:AIQ20436.1}; species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL H7-0357.;"
PLM4_65_b1_redo_sep16_scaffold_2724_7
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

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comp(5723..6817)
-----------------
DNA (1095bp)
protein (365aa)
Peptide chain release factor 1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJH8_9BACT
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
prfA; peptide chain release factor 1
PLM4_65_b1_redo_sep16_scaffold_2724_8
RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated, Acidobacteria, Bacteria

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comp(6927..7130)
-----------------
DNA (204bp)
protein (68aa)
50S ribosomal protein L31 Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037FEE18
50S ribosomal protein L31P
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_59_11_curated
PLM4_65_b1_redo_sep16_scaffold_2724_9
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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comp(7279..8676)
-----------------
DNA (1398bp)
protein (466aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA53114.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
sigma-54 dependent DNA-binding response regulator bin=RBG_16_Aminicenantes_66_30 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=RBG_16_Aminicenantes_66_30 organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
Fis family transcriptional regulator
PLM4_65_b1_redo_sep16_scaffold_2724_10
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

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comp(8673..11516)
-----------------
DNA (2844bp)
protein (948aa)
hypothetical protein bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
multi-sensor signal transduction histidine kinase
Tax=RBG_16_Acidobacteria_70_10_curated
PLM4_65_b1_redo_sep16_scaffold_2724_11
unknown

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comp(11748..13679)
-----------------
DNA (1932bp)
protein (644aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2724_12
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13704..14558)
-----------------
DNA (855bp)
protein (285aa)
Amidophosphoribosyltransferase, putative Tax=Geobacter sulfurreducens RepID=D7AM34_GEOSK
Competence protein ComF {ECO:0000313|EMBL:AJY69861.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurreducens.;"
amidophosphoribosyltransferase
PLM4_65_b1_redo_sep16_scaffold_2724_13
unknown

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14605..15276
-----------------
DNA (672bp)
protein (224aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_2724_14
Myxococcus stipitatus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(15298..15894)
-----------------
DNA (597bp)
protein (199aa)
Thioredoxin family protein Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UK84_MYXSD
thioredoxin family protein
Thioredoxin family protein {ECO:0000313|EMBL:AGC48325.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8).;"
PLM4_65_b1_redo_sep16_scaffold_2724_15
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

15921..17237
-----------------
DNA (1317bp)
protein (439aa)
GTPase HflX Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YPP2_9CHLB
GTP-binding protein HflX
Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
PLM4_65_b1_redo_sep16_scaffold_2724_trna_1
unknown

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17304..17376
-----------------
DNA (73bp)
transferRNA Ala
PLM4_65_b1_redo_sep16_scaffold_2724_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(17422..17739)
-----------------
DNA (318bp)
protein (106aa)
Prevent-host-death protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
prevent-host-death protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_65_b1_redo_sep16_scaffold_2724_17
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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17819..18811
-----------------
DNA (993bp)
protein (331aa)
integron integrase bin=THIO_MID species=Methylohalobius crimeensis genus=Methylohalobius taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
integron integrase
Tax=RBG_16_RIF_WS3X_71_46_curated
Displaying 18 items

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