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PLM4_65_b1_redo_sep16_scaffold_7028

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_7028_1
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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2..532
-----------------
DNA (531bp)
protein (177aa)
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LK99_CHLTF bin=16ft_combo_ws3_JS1 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
UBA/THIF-type NAD/FAD binding protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_7028_2
unknown

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714..1028
-----------------
DNA (315bp)
protein (105aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_7028_3
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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1022..1846
-----------------
DNA (825bp)
protein (275aa)
Putative uncharacterized protein Tax=Methyloversatilis universalis FAM5 RepID=F5RA59_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:EGK72598.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
diguanylate cyclase
PLM4_65_b1_redo_sep16_scaffold_7028_4
Arthrobacter sp. AK-1, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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1894..2439
-----------------
DNA (546bp)
protein (182aa)
putative sensor histidine kinase (EC:2.7.13.3)
Putative signal transduction histidine kinase Tax=Arthrobacter sp. AK-1 RepID=A6YFI6_9MICC
Putative signal transduction histidine kinase {ECO:0000313|EMBL:ABR66990.1}; species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. AK-1.;"
PLM4_65_b1_redo_sep16_scaffold_7028_5
RIFOXYB12_FULL_Lentisphaerae_65_16_curated, Lentisphaerae, Bacteria

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comp(2446..3597)
-----------------
DNA (1152bp)
protein (384aa)
Response regulator receiver sensor signal transduction histidine kinase bin=GWB2_Elusimicrobium_63_22 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWB2_Elusimicrobium_63_22 organism_group=Elusimicrobia organism_desc=Good -
putative histidine kinase
Tax=RIFOXYB12_FULL_Lentisphaerae_65_16_curated
PLM4_65_b1_redo_sep16_scaffold_7028_6
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(3594..4991)
-----------------
DNA (1398bp)
protein (466aa)
Sigma-54 dependent DNA-binding response regulator Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UAD3_MYXSD
Fis family transcriptional regulator {ECO:0000313|EMBL:AKF82192.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
sigma-54 dependent DNA-binding response regulator
PLM4_65_b1_redo_sep16_scaffold_7028_7
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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5136..6956
-----------------
DNA (1821bp)
protein (607aa)
Peptidase M16 domain protein Tax=Pedosphaera parvula Ellin514 RepID=B9XFB9_9BACT bin=16ft_combo_ws3_JS1 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
Uncharacterized protein {ECO:0000313|EMBL:KDA53463.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
zinc-dependent peptidase M16 family protein
PLM4_65_b1_redo_sep16_scaffold_7028_8
Thermoanaerobaculum aquaticum, Thermoanaerobaculum, Acidobacteria, Bacteria

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6953..8482
-----------------
DNA (1530bp)
protein (510aa)
Uncharacterized protein {ECO:0000313|EMBL:KDA53464.1}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 23; Thermoanaerobaculum.;" source="Thermoanaerobaculum aquaticum.;"
peptidase M16 domain-containing protein bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
peptidase M16 domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_7028_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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8495..9403
-----------------
DNA (909bp)
protein (303aa)
DNA-formamidopyrimidine glycosylase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA-formamidopyrimidine glycosylase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_b1_redo_sep16_scaffold_7028_10
Mycobacterium indicus pranii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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9554..10567
-----------------
DNA (1014bp)
protein (338aa)
Regulatory protein, LuxR, putative Tax=Mycobacterium RepID=J9WF86_9MYCO
Regulatory protein, LuxR, putative
Regulatory protein, LuxR, putative {ECO:0000313|EMBL:AFS14843.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium avium complex (MAC).;" source="Mycobacterium indicus pranii MTCC 9506.;"
PLM4_65_b1_redo_sep16_scaffold_7028_11
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(10617..11072)
-----------------
DNA (456bp)
protein (152aa)
Molybdopterin converting factor Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A904_GEMAT
molybdopterin converting factor
Molybdopterin converting factor {ECO:0000313|EMBL:BAH38714.1}; species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC; 100505).;"
PLM4_65_b1_redo_sep16_scaffold_7028_12
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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comp(11075..11320)
-----------------
DNA (246bp)
protein (82aa)
Molybdopterin converting factor, subunit 1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DFI3_SINAD
molybdopterin converting factor subunit 1
Molybdopterin synthase sulfur carrier subunit {ECO:0000256|RuleBase:RU362014}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM4_65_b1_redo_sep16_scaffold_7028_13
unknown

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comp(11404..12015)
-----------------
DNA (612bp)
protein (204aa)

This feature has no annotations

PLM4_65_b1_redo_sep16_scaffold_7028_14
RBG_13_Acidobacteria_68_16_curated, Acidobacteria, Bacteria

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12436..13713
-----------------
DNA (1278bp)
protein (426aa)
Acyl-CoA carboxylase component bin=GWA2_Ignavibacteria_55_11 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
methylcrotonoyl-CoA carboxylase
Tax=RBG_13_Acidobacteria_68_16_curated
PLM4_65_b1_redo_sep16_scaffold_7028_15
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13729..16329)
-----------------
DNA (2601bp)
protein (867aa)
M23 peptidase domain-containing protein Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7UKW9_MYXSD
Uncharacterized protein {ECO:0000313|EMBL:AKF85102.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus fulvus 124B02.;"
M23 peptidase domain-containing protein
PLM4_65_b1_redo_sep16_scaffold_7028_16
unknown

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comp(16462..16542)
-----------------
DNA (81bp)
protein (27aa)

This feature has no annotations

Displaying 16 items

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