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PLM4_65_b1_redo_sep16_scaffold_7475

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_b1_redo_sep16_scaffold_7475_1
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1..789)
-----------------
DNA (789bp)
protein (263aa)
FHA domain/GGDEF domain-containing protein Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MSM8_CORCM
cph2; FHA domain/GGDEF domain-containing protein
FHA domain/GGDEF domain-containing protein {ECO:0000313|EMBL:AFE08418.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
PLM4_65_b1_redo_sep16_scaffold_7475_2
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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comp(859..1647)
-----------------
DNA (789bp)
protein (263aa)
glutamine amidotransferase Tax=Salisaeta longa RepID=UPI0003B37D1A
glutamine amidotransferase class-I
Glutamine amidotransferase class-I {ECO:0000313|EMBL:AEN73487.1}; species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus SG0.5JP17-172.;"
PLM4_65_b1_redo_sep16_scaffold_7475_3
Rubrobacter xylanophilus, Rubrobacter, Rubrobacterales, Rubrobacteria, Actinobacteria, Bacteria

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comp(1619..2536)
-----------------
DNA (918bp)
protein (306aa)
L-proline dehydrogenase (EC:1.5.99.8)
L-proline dehydrogenase {ECO:0000313|EMBL:ABG05833.1}; EC=1.5.99.8 {ECO:0000313|EMBL:ABG05833.1};; species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;"
L-proline dehydrogenase Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ARZ5_RUBXD
PLM4_65_b1_redo_sep16_scaffold_7475_4
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(2559..3893)
-----------------
DNA (1335bp)
protein (445aa)
Uncharacterized conserved protein Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SJ73_HAHCH bin=16ft_combo_ws3_JS1 species=Hahella chejuensis genus=Hahella taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
hypothetical protein
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM4_65_b1_redo_sep16_scaffold_7475_5
RLO_RIF_CHLX_71_12, Chloroflexi, Bacteria

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comp(3908..4366)
-----------------
DNA (459bp)
protein (153aa)
BamK: predicted GCN5-related N-acetyltransferase, associated with benzoate catabolic cluster Tax=Desulfobacula toluolica (strain DSM 7467 / Tol2) RepID=K0NCX6_DESTT bin=16ft_combo_ws3_JS1 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
bamK; GCN5-related N-acetyltransferase BamK
Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated
PLM4_65_b1_redo_sep16_scaffold_7475_6
R_Acidobacteria_67_21, Acidobacteria, Bacteria

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comp(4599..5561)
-----------------
DNA (963bp)
protein (321aa)
lipoate synthase (EC:2.8.1.8)
Lipoyl synthase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LGP8_CHLTF
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
PLM4_65_b1_redo_sep16_scaffold_7475_7
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5589..6443)
-----------------
DNA (855bp)
protein (285aa)
nicotinate-nucleotide pyrophosphorylase (EC:2.4.2.19)
Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:AIB13401.1}; EC=2.4.2.19 {ECO:0000313|EMBL:AIB13401.1};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
Nicotinate-nucleotide pyrophosphorylase Tax=Azospirillum lipoferum (strain 4B) RepID=G7ZH24_AZOL4
PLM4_65_b1_redo_sep16_scaffold_7475_8
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(6440..8104)
-----------------
DNA (1665bp)
protein (555aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
nadB; L-aspartate oxidase (EC:1.4.3.16)
L-aspartate oxidase (LASPO) (Quinolinate synthetase B) Tax=mine drainage metagenome RepID=E6Q6C6_9ZZZZ
PLM4_65_b1_redo_sep16_scaffold_7475_9
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8101..9147)
-----------------
DNA (1047bp)
protein (349aa)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00568}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00568};; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
Quinolinate synthase A Tax=Azospirillum brasilense Sp245 RepID=G8ASX8_AZOBR
quinolinate synthetase
PLM4_65_b1_redo_sep16_scaffold_7475_10
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(9268..10278)
-----------------
DNA (1011bp)
protein (337aa)
Uncharacterized protein Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IUE8_RHOCS
Uncharacterized protein {ECO:0000313|EMBL:ETW93353.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein
PLM4_65_b1_redo_sep16_scaffold_7475_11
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

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comp(10275..10979)
-----------------
DNA (705bp)
protein (235aa)
lipoate-protein ligase B (EC:2.3.1.181)
Octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|SAAS:SAAS00218471}; EC=2.3.1.181 {ECO:0000256|HAMAP-Rule:MF_00013, ECO:0000256|SAAS:SAAS00218470};; Lipoate-protein ligase B {ECO:0000256|HAMAP-Rule:MF_00013}; Lipoyl/octanoyl transferase {ECO:0000256|HAMAP-Rule:MF_00013}; Octanoyl-[acyl-carrier-protein]-protein N-octanoyltransferase {ECO:0000256|HAMAP-Rule:MF_00013}; species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
Octanoyltransferase Tax=Chloracidobacterium thermophilum (strain B) RepID=G2LJ06_CHLTF
PLM4_65_b1_redo_sep16_scaffold_7475_12
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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11247..11408
-----------------
DNA (162bp)
protein (54aa)
Putative integral membrane protein bin=GWE1_T_denit_62_9 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
Tax=GWE1_Thiobacillus_62_9_curated
Displaying 12 items

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